Methylomonas paludis: KEF85_14060
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Entry
KEF85_14060 CDS
T07508
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mpad
Methylomonas paludis
Pathway
mpad02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mpad00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KEF85_14060 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpad03021
]
KEF85_14060 (rpoD)
Transcription machinery [BR:
mpad03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KEF85_14060 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_20
IBD
SesA
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QWF72585
UniProt:
A0A975MRQ6
LinkDB
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Position
complement(3104207..3106018)
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AA seq
603 aa
AA seq
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MNQEQQQSQLKQLIAKGKAQGYLTYAEVNDHLPSDIMDPEQIDDIIGMINDMGIQVYEVA
PDDDDSLITSDAVVTADDDEEVAEVAALASVDSEFGRTTDPVRLYMREMGSVELLTREEE
LKIAKRIEEGQRQMVNAIAHSGFIVESFLASFDSLQNDDSELRLSDMVLGFVDLTEVELD
VAEELDAAPVEEAEEEETRSIDFEEVKQKVDLVRKALKSVNSALKKHGYGQEKTEKAFDA
LSEVFSEFKWAPQYLKKMVTLSDELVLEIRNQEKLLLDIFVKKAKIPRKDFVAAFTANET
NSSWLPQYIEAHPHYAAALQEHQQQIIASQQKMAEIESNYGLSVAALKSICRNITQGEAK
ARRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA
TWWIRQAITRSIADQARTIRIPVHMIETINKLNRVSRQILQELGREATPEELAERMEMPE
DKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSKMLSPVESATIAGLRESTQNVLAGL
TAREAKVLRMRFGINMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEQLRCFL
DGE
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaatcaagagcaacagcaatcccaacttaaacaattgatcgccaaaggcaaagcgcaa
ggttatctgacctatgcggaagtcaacgatcacttgcctagcgacatcatggatcctgaa
caaatcgatgacatcattggtatgatcaatgacatgggtattcaggtttatgaagttgct
ccagacgatgacgattcgctgattacttcggatgccgttgtcactgcagatgacgatgag
gaggttgctgaagtggcggccttggcttctgtggacagtgaatttggtcgaaccaccgat
ccggtgcggctctatatgcgggaaatgggttcagtggaattgttaacccgcgaagaagag
ctgaaaatagccaaacggatcgaagaaggtcagcggcaaatggttaacgccattgcccat
tccggttttattgttgaatcatttttagcctctttcgattctttgcaaaatgatgattcc
gagctgcgcctgagtgatatggtgttgggctttgtggatctcactgaagttgagctggat
gtcgctgaagagctggacgcagcccctgttgaggaagctgaggaagaagaaactcggtct
atcgatttcgaagaagttaaacaaaaggtggatctggttagaaaagcgcttaaatcggtt
aattcagcgcttaaaaaacatggttatggtcaagagaaaaccgaaaaagcttttgacgca
ttgtccgaggtgttttccgaattcaagtgggctccacaatacctgaaaaaaatggtaacg
ctttccgatgagctggtgttggagatacgcaatcaggaaaaattgttgctggatattttt
gtcaagaaagccaaaattccgcgcaaagattttgtggcagcttttactgcaaacgaaacc
aatagtagctggctgcctcaatacatcgaagctcatccgcattatgcggcggcattgcag
gaacatcagcagcagattatagcttcccagcaaaagatggctgaaattgagtccaattat
ggtttgagtgtggcggctctgaaatcgatttgtcggaatattacccagggcgaagccaaa
gccagacgcgctaaaaaggaaatgatagaagccaatttgcgcttagtaatttccatagcc
aaaaaatataccaaccgtggtttgcaatttttggatttgattcaggaaggcaatatcggt
ttgatgaaggcggtggataagtttgagtatcgacgcggttacaaattttctacctatgca
acctggtggatacgtcaggccattactcgatcaatagccgatcaagccagaacgattcgg
atcccggtgcatatgatcgaaaccattaataagctgaatcgtgtatccaggcaaattttg
caggaactggggcgggaggcaactccagaagaattggccgagcgcatggaaatgcccgaa
gacaaaattcgtaaggtactgaaaattgccaaagagccgatttccatggaaacacccatc
ggtgatgacgaagattcgcatttaggtgattttattgaagattcaaagatgctatcgccg
gtagaatctgctacaatcgccggtctacgcgaatccacgcaaaatgttttggcaggtttg
accgcgcgtgaggccaaagttttacggatgcggtttggtatcaatatgaatactgatcat
acattggaagaagttggtaaacagtttgatgtaacccgtgagcggatacgtcaaattgag
gcgaaagcgttaagaaaattaagacatccatccagatccgaacaattaagatgttttctg
gatggtgaataa
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