Microbulbifer pacificus: R5R33_00830
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Entry
R5R33_00830 CDS
T09537
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mpaf
Microbulbifer pacificus
Pathway
mpaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R5R33_00830 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpaf03019
]
R5R33_00830 (rne)
03009 Ribosome biogenesis [BR:
mpaf03009
]
R5R33_00830 (rne)
Enzymes [BR:
mpaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
R5R33_00830 (rne)
Messenger RNA biogenesis [BR:
mpaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
R5R33_00830 (rne)
Ribosome biogenesis [BR:
mpaf03009
]
Prokaryotic type
rRNA processing factors
R5R33_00830 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DUF4901
Motif
Other DBs
NCBI-ProteinID:
WOX05722
UniProt:
A0AAU0MYD0
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All DBs
Position
204494..207601
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AA seq
1035 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQWLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEISREYFNKQPKEIEGRIKIKDVVKEGMEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGEERSDLRDALSDVEVPSGMGIIVRTAGVGRSGEE
LQWDLNYLLQLWTAIKKEADDSKAPHFLFQESNVIIRAIRDYMRDDIGEVIVDEEGAYQL
AAEFARQVMPNYANKVKYYEDNIPLFNRYQIESQIETAFEREVKLPSGGSIVIDVTEALV
SIDINSSRATKGGDIEETARTINLEAADEIARQLRLRDMGGLVVIDFIDMQNKSNQREVE
KRMEKALGMDRARVQVGRISRFGLLEMSRQRLRPSLGETTFRVCPRCSGQGTIRGTKSLA
LSILRLVEEEAKKERSAEIRAITPVNVATYLLNEKRKTISNIEARNRTRVVVVPNADLET
PHFEVLRLRDDDSATVETSYKISGTIEETVNKNREEEPLRAPTAAQPAVQQIAHTAPAPT
PVAKPKPKNEAVSKPGLFSRLIGAIAALFTGGEEEKSEGKHKKTKGRGKDYQQQRNRNNQ
RGGRGRGRGNRGGRRDEQAGDEREERKADSRSRRGERSRDDRSRDENAPAERRQESAETA
RDSSQEGREGQRDGQRRNRRRRGGERGDRREQQPTAVEVESTNLDSEAQAVESDDDQQRP
ARRPSNVRGRPQPRRRGRRGETGDASDTADSEQQELNREVNEAIDSAERETAAKPVRAEQ
PAADRPAADKEPQRKRDPWADSKPQVAAPAAAEVPAAKTSEEKSEEKPAVKPVERPAKVE
AAAPAAETPEVTAAQEPVAAEEATPKAIAPEAAPVADTSSEVEQPAVTAGIEAAEEVVKT
EGVVASEEVFEEVAEKAAAETTAEVAQVEIKTEAAEEVKAEAVAEQPKAVETASAPAAVE
RQPGRAGNDPRINPKPLVDFTVVTARPEIGELRPLDTAQPANIAHNPRPLQRPANDPRVK
RDAAEETGSDSAEAG
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaatgctgatcaacgcaacccagccggaagagctgcgcgttgctctggtcgac
ggccagtggctgtacgacctggatatcgaaaaccgcacccgcgaacagaaaaaagccaat
atctacaagggtaaaattacccgcgttgagccctccctcgaagccgccttcgtcgactac
ggtgccgagcgccacggcttcctgccgctgaaagaaatctcccgcgaatacttcaacaaa
cagcccaaagaaatcgagggccgcatcaagatcaaggatgtggtcaaagagggcatggaa
gttattgtccaggtggacaaggaagagcgcggtaacaagggcgcagccctgaccactttc
atcagtctcgccggtcgctatctggtgctgatgcccaacaacccgcgtgccggcggcatc
tcccgccgtatcgaaggcgaagagcgcagcgacctgcgcgacgcgctctccgatgttgaa
gtgccctccggtatgggcattatcgtgcgcaccgccggcgttggccgcagcggcgaggaa
ctgcagtgggacctcaactacctgctgcagctgtggaccgcgatcaagaaagaagccgac
gactccaaggcgccccacttcctgttccaggaaagcaacgtcatcatccgcgccatccgt
gattacatgcgtgacgatatcggcgaagttatcgtcgacgaagaaggtgcctaccagctg
gctgcagagttcgcccgtcaggtgatgccgaactacgccaacaaggtgaagtactacgaa
gacaatatcccgctgttcaatcgctaccagattgaaagccagatcgagactgcgtttgag
cgcgaagtgaaactgccttccggcggctctatcgttatcgacgtcaccgaagccctggtc
tctatcgacatcaactcctcccgcgctaccaaaggtggcgacatcgaggaaaccgcgcgc
accatcaacctggaagccgcggacgagatcgcccgccagctgcgtctgcgcgacatgggt
ggtttggtggtcatcgacttcatcgacatgcagaacaagtcgaaccagcgcgaagttgaa
aagcgtatggaaaaggccctgggcatggaccgcgcccgggtacaggtaggccgcatctcc
cgtttcggcctgctggaaatgtcccgccagcgcctgcgtccgtccctgggtgaaaccacc
ttccgcgtctgcccccgctgtagcggccagggcactattcgcggcaccaagtccctcgcc
ctctccatcctgcgactggtggaagaggaagccaagaaagagcgcagcgcagagattcgc
gcgatcaccccggtgaacgtggcgacctacctgctcaacgagaagcgcaagaccatttcc
aatatcgaagcgcgcaaccgcacccgcgtagtggtggtgcctaacgccgatctggaaacc
ccgcacttcgaagtgctgcgcctgcgtgatgacgactccgctaccgtcgagacctcctac
aagatctccggcaccattgaggaaaccgtcaacaagaaccgggaagaagagccgctgcgc
gcaccgactgcggctcagcccgcggtacagcagatcgcgcacaccgccccggcaccgacc
ccggtggccaaaccaaagccgaaaaacgaagctgtttcgaagcccggactgttcagccgc
ctgatcggcgccatcgccgccctgttcactggcggcgaagaggagaaatccgaaggcaag
cacaagaaaaccaaaggtcgtggcaaagactaccagcagcagcgcaaccgcaataaccag
cgtggcggtcgtggacgtggtcgtggcaatcgcggcggccgccgcgacgagcaggccggt
gatgagcgtgaagaacgcaaggccgacagccgctctcgccgcggtgagcgaagccgcgac
gacagaagccgtgacgaaaacgctcccgccgagcgccgtcaggagagcgcggaaactgcg
cgcgacagcagccaggaaggccgcgaaggtcagcgcgacggtcagcgtcgcaaccgcaga
cgccgcggcggtgaacgtggcgatcgccgcgagcaacagcccactgcagtggaagtcgaa
agcactaacctcgatagcgaagcacaggccgttgagtccgatgacgaccagcagcgcccc
gcgcgccgcccgagcaatgtgcgcggacgcccgcagccccgccgtcgcggccgccgcggt
gaaactggtgacgccagcgacactgcggatagcgaacagcaagagctgaaccgtgaagtt
aatgaagccattgactccgcggaacgcgaaactgccgccaagccggtacgcgcggaacag
cctgcggccgaccgccctgcagcggacaaagaaccacagcgcaaacgcgacccgtgggct
gatagcaaaccgcaggtagccgcaccggctgcagcggaagtgcctgcagcaaaaacctct
gaagagaaatccgaagagaagcccgcggtgaaaccggtcgagcgccctgcaaaagtcgaa
gctgcggcccccgctgcagagacccctgaagttactgcagcgcaagagcctgtcgccgct
gaagaagccactccgaaagcgattgcgccggaagctgcacctgtagctgatacctcttcc
gaggttgaacagccagcagtaaccgcgggcatcgaagctgctgaagaagtggtcaagact
gagggcgtggttgctagcgaggaagtgtttgaagaagtggccgagaaagctgctgcagag
accactgccgaagtcgcgcaggttgaaatcaagaccgaagctgctgaagaagttaaagca
gaagcggttgcagaacagcccaaagccgtggaaaccgccagtgcaccggctgcggtcgaa
cgccagcctggccgcgctggcaacgacccgcgcatcaaccccaaaccgctggttgatttc
accgtggttaccgcgcgtccggaaattggcgaactgcgcccgctggacaccgcccagccg
gcaaacatcgcccacaacccgcgcccactgcagcgccccgccaatgaccctcgtgtcaaa
cgcgatgcggcagaggaaactggttccgactctgcggaagccggctga
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