Microbulbifer pacificus: R5R33_01920
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Entry
R5R33_01920 CDS
T09537
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mpaf
Microbulbifer pacificus
Brite
KEGG Orthology (KO) [BR:
mpaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpaf03016
]
R5R33_01920
Enzymes [BR:
mpaf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
R5R33_01920
Transfer RNA biogenesis [BR:
mpaf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
R5R33_01920
Prokaryotic type
tRNA splicing ligases
R5R33_01920
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WOX05935
UniProt:
A0AAU0MZC2
LinkDB
All DBs
Position
complement(450016..451449)
Genome browser
AA seq
477 aa
AA seq
DB search
MSTRYPLIHESEYSWRIDPSGKMRVPAIIYADETLIREMDDKVFEQLCNVASLPGIVQAA
YAMPDAHWGYGFPIGGVAAFDPDEGGIVSAGGVGFDISCGVRALRTGVSIDEIEPVKKQL
ADALFRHVPVGVGSTGRIHLNDKGMQAMLRGGAQWAVEQGFGDPADLEHIEERGCMRGAV
PEEVSERARTRQQDEMGTLGSGNHYLEVQRVAEIYDQRIATAFGLKENDAVVFIHCGSRG
LGHQIGTEFLKYMVLAAGKHGIDLPDRELACAPINSELGQSYLGAMRAGINCALANRQII
THLTREVFAEVVPMADLTLLFDVSHNTCKVEEHLVEGRQRKLYVHRKGATRAFGPGNREI
PETLRAAGQPVLIGGSMGTESHILAGSVEGAGLSFNSACHGAGRAMSRHQATKRWRGRAL
VDELADRGILIRSPSMRGVAEEAPGAYKNVRAVVDAAEKAGLAHKVARMEPRVCIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgagtacgcgttacccgctcatacatgaatcggaatacagctggcgaatcgatccctcc
ggcaaaatgcgcgtgcccgcgatcatctacgccgacgagacactgatccgggaaatggac
gacaaggtcttcgagcagctgtgcaatgtggcgagtctgccgggcatagtgcaggccgct
tacgccatgcccgatgcacactggggatacggctttcctatcggcggcgtcgcggcgttt
gacccggatgagggcggtattgtttccgccggcggtgtcggcttcgatatctcctgcggt
gtgcgtgcattgcgcaccggtgtctcgatcgatgaaatagaaccggtcaagaagcagctg
gcggatgcactgttcaggcatgtgccggtgggggtgggcagcaccgggcgcattcacctg
aacgacaaggggatgcaggcgatgctgcgcggtggcgcgcagtgggcggtggagcagggt
tttggtgatccggcggaccttgaacatatcgaggagcggggctgtatgcgcggtgcagtg
cccgaggaagtgtcggagcgggcgcgcactcgccagcaggatgagatgggcacgctgggc
tccggtaaccactacctggaagttcagcgggtggccgagatttatgatcagcgtatcgcc
accgccttcgggctgaaggaaaacgatgcggtggtgtttatccattgtggctcgcgcggt
ctcgggcaccagattggcaccgaattcctgaaatacatggtgctggccgccggcaagcac
ggcatagacctgccggaccgcgagctggcctgtgcaccgatcaattccgagctggggcag
tcgtacctcggcgcgatgcgcgccggcatcaactgcgcgctggcgaaccggcagatcatc
acccatctcacccgcgaggtattcgccgaggtcgttcccatggcggatctgaccctgttg
ttcgacgtctcccacaatacctgcaaggtggaagagcatcttgtggaaggccggcagcgc
aaactgtacgtccatcgcaagggggccacgcgcgcctttggtccaggtaaccgggaaatt
ccggagacgctgcgggcagcggggcagccggtcctgatcggcggttccatgggtaccgag
tcccatattcttgcgggttccgtcgagggcgcggggctgtccttcaattccgcctgccac
ggcgccggtcgcgccatgagtcgccaccaggccacaaaacgctggcggggacgtgcgctg
gtcgatgaattggcggatcgcggaatccttatccgcagcccgtcaatgcgcggggtggcc
gaagaagcgcccggtgcctacaagaatgtgcgcgcggtggtagatgcggcggagaaggcc
ggtctcgcccacaaggtggcgcggatggagccacgggtctgtatcaaaggctga
DBGET
integrated database retrieval system
