Microbulbifer pacificus: R5R33_02500
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Entry
R5R33_02500 CDS
T09537
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mpaf
Microbulbifer pacificus
Brite
KEGG Orthology (KO) [BR:
mpaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpaf03016
]
R5R33_02500
Enzymes [BR:
mpaf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
R5R33_02500
Transfer RNA biogenesis [BR:
mpaf03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
R5R33_02500
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
OB_RNB
RNase_II_C_S1
DUF7686
Motif
Other DBs
NCBI-ProteinID:
WOX06029
UniProt:
A0AAU0N1W7
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All DBs
Position
575362..577353
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AA seq
663 aa
AA seq
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MLNADALKQLTQLKTEIRSSKEFAEGRVRGSSGKFGFVVLDDGREAFLPPAEMDRVFPGD
RVRISLTEEEQGKLTAELDQLIESSLTYLVGQYIQRGQGHFIQPSEPGLSRWIFLPPKAR
GKAQPGEFIACSINRHPFKDGKSQAKVECVIGKPDMAGIEHAFIVAQHRLPNQFSLAALE
QAEAIPAKLEALCAERKDLSDLGFVTIDAETTRDMDDALAVTAADNGWNLHIAVADPSSL
IEPGSPLDKEARQRANSVYLTGETLPMLPANLCENSFSLLAGELRPALVLHIAIGSDGAL
NGCEYEFAAIRSQHKLSYNQVARFIEGDDSAVPADQQQSLRLLDALSKARTSYRAGHSLM
MEDRPDYELILNDQRKIERIEKQERTAAQRMVEEAMLATNICAGEKLAELGAGCFSIHLG
FRDERMAEIRALLKDALPEYAEQDLHQLDVYLKLVKHLEGHADAEMKNVLAVLKRMLRPG
ELSNKAAPHLGLGLAHYATVTSPIRKFNDLHNHRALRAAQAGSELPSLNDEQGEALQQSV
ATGRQADRALQQWLYCQYLEGKVGETFTGKITLVNGAGIGVRLEENGINGFVRFNGKKNP
FEFDGKRLRITRGDERFQLDQEVQVKVGAVDTDKRRIALELVTDTPDQSQVDAAPEQADH
TAE
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
atgctgaatgccgacgccctcaagcagctgacccagttgaaaaccgaaatccgctcttcc
aaggaatttgccgaggggcgtgtgcgcggcagcagcggcaagttcgggtttgtggtgctg
gacgacggccgcgaggcattcctgccgccggcggaaatggaccgggtattccccggcgac
cgggtgcgtataagcctgaccgaagaggaacagggaaagctcaccgccgagctggaccag
ctgatcgaatccagccttacctacctggtggggcaatatatccagcggggccagggccac
tttatccagcccagtgagccgggcctgtcgcgctggatcttcctgccacccaaagcgcgc
ggcaaggcgcagcctggtgagttcatcgcctgctccatcaatcgccacccgttcaaggac
ggcaagtcccaggcgaaagtggaatgcgtaatcggcaagccggacatggccggtatcgaa
cacgcgtttatcgttgcccagcaccgactgccgaaccagttcagcttggccgccctcgag
caggcggaggccatcccggcgaaactggaagcgctgtgcgccgagcgcaaggatctgtcc
gatctgggctttgtcaccatcgacgccgagaccacccgggatatggacgacgcccttgcc
gtcaccgccgcggacaacggctggaacctgcacatcgccgtggccgacccttccagcctt
atcgaaccgggttcgcccctcgacaaggaagcgcgccagcgcgccaacagtgtctatctc
accggtgaaaccctgccgatgctgccggcaaacctgtgcgaaaacagcttctcgctgctg
gcgggcgagctgcgcccggcgctggtgctgcatattgccattggcagcgacggcgccctc
aatggctgcgaatacgaattcgccgcgatccgctcccagcacaaactgagttacaaccag
gtggcgcgctttatcgaaggcgacgacagcgcggtgcccgcggaccagcagcagagcctg
cgcctgctcgacgccctgagcaaagcccgcaccagctaccgcgccggtcactcgctaatg
atggaagaccgcccggactacgagctgatcctgaatgaccagcgcaagattgagcgcatt
gaaaagcaggagcgcaccgcggcccagcgcatggtggaagaagccatgctcgccaccaac
atctgcgccggcgaaaagctcgcggaactcggtgccggttgcttctccattcacctgggc
ttccgcgacgaacgcatggcggaaattcgtgcgctgctgaaagacgcactgcccgaatac
gcggagcaggatctgcaccagctggacgtctatctgaaactggtcaaacacctcgaaggc
cacgcagacgcggaaatgaaaaacgtgctggcggtgctgaagcgcatgttgcgcccgggc
gagttatccaacaaggccgccccgcacctgggactcggcctcgcgcactacgccaccgtc
acctcccctatccgcaagttcaatgatctgcacaaccaccgcgccctgcgtgccgcccaa
gctggcagcgagcttccgtcactcaacgacgaacagggcgaagccctgcagcagagcgtg
gccaccggccgtcaggcggaccgcgcgctgcagcagtggctgtattgccaatacctggaa
ggcaaagtgggcgaaacgttcaccggcaagatcaccctggtaaacggcgccggcatcggc
gtgcgtctcgaggaaaacggcatcaacggcttcgtgcgcttcaacggcaaaaagaatccg
ttcgagtttgacggcaagcgcctgcggatcacccgtggcgatgagcgcttccagctggac
caggaggtacaggtgaaggtgggtgcggtggataccgacaagcgccgcatcgcccttgaa
ctggtgacggatacgccggaccaaagccaggtggatgcagcacccgagcaggccgaccac
actgccgagtaa
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