Microbulbifer pacificus: R5R33_04725
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Entry
R5R33_04725 CDS
T09537
Symbol
murD
Name
(GenBank) UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
KO
K01925
UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:
6.3.2.9
]
Organism
mpaf
Microbulbifer pacificus
Pathway
mpaf00470
D-Amino acid metabolism
mpaf00550
Peptidoglycan biosynthesis
mpaf01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mpaf00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
R5R33_04725 (murD)
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
R5R33_04725 (murD)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
mpaf01011
]
R5R33_04725 (murD)
Enzymes [BR:
mpaf01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.9 UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
R5R33_04725 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:
mpaf01011
]
Precursor biosynthesis
Amino acid ligase
R5R33_04725 (murD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MurD-like_N
Mur_ligase_M
Mur_ligase_C
Shikimate_DH
XdhC_C
TrkA_N
Motif
Other DBs
NCBI-ProteinID:
WOX06440
UniProt:
A0AAU0N279
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All DBs
Position
complement(1048111..1049517)
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AA seq
468 aa
AA seq
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MNLIATSEKKVVIGMGATGQSVVRFLLSQGFSPVVVDSRDTPPALEAFRKEFPQVSVECG
PLNPETLLAASEIIASPGIGVAEPAIAAAVAAGIPVVGDIELFARALVNAEPAPKVIAIT
GSNGKTTVTTVVGLMAEAAGVSVRVGGNIGVPVLDFVAPGAELPQLFVLELSSFQLETTY
SLAPEVATILNISADHMDRYPDLGAYHRAKQRVYRHAHQMVINRADSLTRGPLSRDRREW
SFGLDRPDLKQFGVITENGQQWLAQGHEKLMPASEMAMVGSHNVANALAALALGNAVGLP
MAPMLQVLRSFAGLAHRCERVADLDGVTFVNDSKGTNVGATRAALDGLADGERKIVLIAG
GDGKGADFSPLAEAAGVLRGLVTIGVDGPKIAAAFGALVAQEGATDMRDAIAKAKALACD
GDYVLLSPACASFDMFRNFEHRGEVFRREVAELVQSSSGAQCAGGMNE
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcatcgcaacctcagagaaaaaagtggtgatcggaatgggcgctaccgggcag
tcggtggtgcgctttctgctgagccagggtttctctccggttgtggtggacagccgcgat
acgccgccggcactggaggccttccgcaaggaattcccgcaagtatccgtagagtgcggc
ccgctgaatccggaaaccctgctggcagcgagcgagatcatcgcgagtcccggtatcggt
gtggcagagcccgcgattgctgcggcggtggccgcaggtatcccggtagtgggtgatatc
gaactgttcgcgcgcgcgctggtaaacgctgagcccgcgcccaaggtcatcgccattacc
ggctccaacggtaagaccaccgtcaccaccgtggtggggctgatggctgaggctgccggt
gtaagcgtcagggtgggcggcaatatcggtgtgccggtactggattttgtcgcgccgggt
gcagagctgccgcaactgttcgtgttggaactttccagcttccagcttgaaaccacctac
tcgctggcaccggaagtggccacgatcctgaatatcagcgcggaccatatggaccgctac
ccggatctgggtgcatatcaccgcgccaagcagcgggtctaccgccacgcgcaccagatg
gtgatcaaccgtgcggattcgctcacccgcggcccgctgtcccgcgaccgtcgcgagtgg
agtttcggtctggatcgcccggatctgaaacagtttggggtgatcaccgaaaacggccag
cagtggttggcccaggggcacgagaagctgatgcccgcgagcgaaatggctatggtgggc
agccataacgtggccaacgcgctggcggcgctggcgctcggcaatgcggtggggctgccc
atggcgccgatgctgcaggtgctgcgcagcttcgccggtctcgcgcaccgctgcgagcgg
gtggcagatctcgatggggttacttttgtaaatgactccaagggcaccaatgtgggcgct
acccgcgcggcactggatggcctggcggatggtgaacgcaagatcgtgctgatcgcaggt
ggcgacggcaagggcgcggatttttcacctctggcggaggccgccggcgtgttgcgcggt
ctggtcaccatcggtgtcgacggccccaaaatcgccgcggcgtttggcgcactggtggcg
caggagggggctactgatatgcgtgatgccatcgccaaggcaaaggcgctggcctgtgac
ggcgactatgtactgctgtctcccgcctgtgccagctttgatatgttccgcaacttcgag
caccgcggtgaagtgtttcggcgcgaagtcgctgaactggtgcagtcctccagcggcgcg
cagtgcgcgggagggatgaatgagtaa
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