Microbulbifer pacificus: R5R33_06005
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Entry
R5R33_06005 CDS
T09537
Name
(GenBank) sigma-54 dependent transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
mpaf
Microbulbifer pacificus
Pathway
mpaf02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
mpaf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
R5R33_06005
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
mpaf02022
]
R5R33_06005
02035 Bacterial motility proteins [BR:
mpaf02035
]
R5R33_06005
Two-component system [BR:
mpaf02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
R5R33_06005
Bacterial motility proteins [BR:
mpaf02035
]
Pilus system
Twitching motility proteins
R5R33_06005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
AAA_lid_14
HTH_8
HTH_30
AAA_5
AAA_16
HTH_28
HTH_50
Motif
Other DBs
NCBI-ProteinID:
WOX06682
UniProt:
A0AAU0N127
LinkDB
All DBs
Position
1340441..1341859
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AA seq
472 aa
AA seq
DB search
MADRQPIALVVDDEPDICNLISMTLQRMDVRADIAMSVAEARRRLAEKHYDFCLTDMRLP
DGDGLQVVEAIQELPADRALPVAVITAHGNMDTAIAALKLGAFDFVSKPVNLERLRNLVQ
LALRLNEGRFLARQEFPALFQGQSDAIQALRVQIEKIARSDAPVHITGEAGSGKELAARC
IHDQGPRCNRAFVPVHCATIPAEQLEPLLFGGPIQSERASGLLQTANGGTLYFDDVTELP
QDIQVKLLRAIQEKGFRSAATGENIKLDIRILTGSRKPLTDEVRAGRFRSDLYYLINVIE
LAIPPLRERREDIPLLTRNVLRRISSESRGAAAKASQDAVLALQTYSFPGNLRELENILE
RAVTLGESSTLYARDLVIPAASPIPCNTGTRQNDLSPLIPPSVSTGTLLAAYPGQFSSSD
FETLDDFLQSIEREAIESALGETGGNKTAAAEKLGISFRSLRYRLKKLNMEE
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggccgaccgacaacccattgccctggtggtggatgacgagcccgacatctgcaacctg
atttcaatgaccctgcaacgcatggacgtgcgcgcggatatcgccatgtctgttgccgag
gcgcggcgtcgccttgcggaaaaacattacgatttctgcctcactgatatgcgcttaccg
gacggtgacggcctgcaggtcgtggaagccattcaggaactacccgccgatcgcgcactc
ccggtcgccgtcatcaccgcccacggcaatatggatacggccattgccgcgctcaaactc
ggcgctttcgattttgttagtaaacccgtcaatttggagcgcctgcgcaacctcgtgcag
ctggcactgcgcctcaacgaaggtcgctttctggcacgccaggaattcccggcgctgttt
caaggccagtcggatgccatccaggcactccgggtacagattgaaaaaattgcacgcagc
gatgcaccggtgcatatcaccggcgaggcgggctcaggcaaggaactggccgcaaggtgc
atccacgatcagggcccccgctgtaatcgcgcgttcgtcccggtgcactgcgcaaccatc
cccgccgaacaacttgagccgctgctgtttggcggcccgatacaatccgagcgtgcctcg
gggctgctgcagaccgcaaacggcggcactctctacttcgatgatgtgacagagctgccg
caggatattcaggtcaaactgttgcgcgccattcaggaaaaaggctttcgctctgctgcc
accggtgaaaatataaagctggacattcgtatactgacaggttcacgcaaaccgctcacc
gacgaagtccgcgcaggccgttttcgcagcgacctttactatctgatcaatgtcatcgaa
ctcgccataccaccactgcgcgagagacgcgaagatatcccgctgttaacacgcaatgtg
ttgcggcgtataagcagcgaatcccgaggtgcggcagcaaaggcatcccaggatgccgtc
ctcgccctgcagacctattcctttccgggcaatctgcgggagctggaaaatatactcgag
cgcgctgtcaccctgggggagagcagtacactctatgcgcgggatcttgtcattcctgcg
gcgtcgccaattccctgcaatacgggcacaaggcaaaatgatctttccccattgattccg
cccagtgtatccacaggtactctccttgcggcttaccccggacagttttcctcttcagac
tttgaaacactggatgacttcttacaatccatcgaacgggaagcgattgaaagcgccctc
ggtgaaaccggcgggaacaagactgcagcggcggagaagctgggaatcagttttcgctcc
ctgcgctaccggctgaaaaagctcaatatggaagagtaa
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