Microbulbifer pacificus: R5R33_06445
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Entry
R5R33_06445 CDS
T09537
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mpaf
Microbulbifer pacificus
Pathway
mpaf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mpaf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
R5R33_06445 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpaf03021
]
R5R33_06445 (rpoC)
03400 DNA repair and recombination proteins [BR:
mpaf03400
]
R5R33_06445 (rpoC)
Enzymes [BR:
mpaf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
R5R33_06445 (rpoC)
Transcription machinery [BR:
mpaf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
R5R33_06445 (rpoC)
DNA repair and recombination proteins [BR:
mpaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
R5R33_06445 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
ApbA_C
Macoilin
Motif
Other DBs
NCBI-ProteinID:
WOX06767
LinkDB
All DBs
Position
complement(1427873..1432102)
Genome browser
AA seq
1409 aa
AA seq
DB search
MKDLLNLVKAQDQLEEFDAIRIGLASPDMIRSWSYGEVKKPETINYRTFKPEREGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAKVRRERMGHIELASPVAHIWFLKSL
PSRIGLLLDMTLRDIERVLYFESYVVTDPGMTTLERGQLLNDEQYFEAMEEFADEFEAKM
GAEAIQELMNDIDLPSEIQRLREEIPSTNSETKIKKLSKRLKLLEAFYKSGNKPEWMVMQ
ALPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKKMALELFKPFIFGKLEARGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLES
RALMMSTNNILSPANGEPIIVPSQDVVLGLYWMTRERVNDKGEGMFFSDIKEVSRAFYAK
QVGLQAKVKVRIDEVEIGEDGEKRQTRTVYDTTVGRALLWNIVPDGMPFDMVNQPMKKKA
ISRVLNECYRKVGLKATVIFADQLMYTGFDFSTKSGSSIGVNDFEIPSAKADLIASAEEE
VKEIESQFASGLVTAGEKYNKVIDVWSRTNDKVTQAMMAGIRKEKVIDREGKETEQDSFN
SVYMYADSGARGSEAQIRQLAGMRGLMARPDGSIIENAITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEIDCGTDEGLTMAPVIEGGDVIESLGDRIL
GRVVARDVPKPGSDEIAVPAGTMIDEAWVERIEGMGIDEVIVRSAITCETAHGICAQCYG
RDLARGHRANPGEAVGVVAAQSIGEPGTQLTMRTFHIGGAASRASAADSIQVKLGGTVRL
HNVKTVKAASGNLVAVSRSGELAIADSAGRERERYKLPYGAQISVDEGAEVDGGKIVAKW
DPHTHPIITEVAGWVKLSGMEDGLSIRKQTDEITGLSSIEVIDPAERPAAGKDLRPAVTL
VDENGEELTLASSSAPAHYALPPRAILSLKEGDKVSVGDVIARIPQESGKTKDITGGLPR
VADLFEARKPKEPSILAEISGTVSFGKETKGKVRLQITPKDGKPLANGKDSYEVLIPKHR
QLTVFEGETVEKGEVISDGPSNPHDILRLKGVEELARYITNEIQEVYRLQGVKINDKHIE
TIVRQMLRKVEILEMGDSEFIKGEQVEYQAVIEQNERLRAESKQPAQYERLLLGITKASL
ATESFLSAASFQETTRVLTEAAVTGKEDSLRGLKENVVVGRLIPAGTGLAYHTERKRKRT
AQVSFGYAEGPSAEEVEAALTEALKSSGE
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagatttgttaaacctggtgaaagcccaggatcagctggaagaatttgacgcgatc
cgcatcggtctggcatccccggacatgatccgctcctggtcctacggcgaagtgaaaaag
ccggagaccatcaactaccgtaccttcaagccggagcgtgaaggcctgttctgcgccaag
atttttggcccggtaaaggactacgagtgtctgtgcggcaagtacaagcgcatgaagcac
cgcggcatcatctgtgagaagtgcggtgttgaagtgaccaaggccaaggtgcgtcgtgag
cgcatgggccacatcgaactggcaagcccggttgcacacatctggttcctgaagtccctg
ccgtcccgtatcggcctgctgctggacatgaccctgcgtgacatcgagcgcgtactgtac
ttcgaatcctatgtggtaaccgatccgggtatgaccaccctggagcgcggccagctgctg
aacgatgagcagtacttcgaagcgatggaagagttcgccgacgagttcgaagcgaaaatg
ggtgcggaagccatccaggagctgatgaacgatatcgacctgccgtctgaaattcagcgt
ctgcgggaagagattccgtccaccaattccgagaccaagatcaagaagctgtccaagcgc
ctgaagctgctggaagccttctacaagtccggcaacaagccggagtggatggtcatgcag
gcactgccagtactgccgccggacctgcgtccgctggtaccgctggacggcggccgtttc
gcgacctccgacctgaacgatctgtaccgtcgcgtgatcaaccgcaacaaccgtctgaag
cgcctgctcgagctgaacgcgccggatatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcagtagacgcactgctggataacggtcgtcgcggccgtgccatcaccggttccaac
aagcgcccgctgaaatccctggccgacatgatcaagggtaagcagggtcgtttccgtcag
aacctgctgggcaagcgcgttgactactccggtcgttcggtgatcgtggtaggtccgacc
ctgcgtctgcaccagtgtggtctgccgaagaaaatggcactcgagctgttcaagccgttc
attttcggcaagctggaagcccgcggcctcgccaccaccatcaaggcggcgaagaaaatg
gtcgagcgcgaagaagcggtggtgtgggatatcctcgatgaggtgatccgcgagcacccg
gtactgctgaaccgcgccccgaccctgcaccgtctgggtatccaggcgtttgagccggtg
ctgattgaaggtaaagcgatccagctgcacccgctggtgtgtgcggcgtacaacgccgac
ttcgacggtgaccagatggcggtacacgtaccgctgaccatcgaagcgcagctggaatcc
cgcgcgctgatgatgtccaccaacaacatcctgtcgcccgccaacggtgagccgatcatc
gtaccgtcccaggacgtggtactgggtctgtactggatgacccgcgagcgcgtgaacgat
aaaggcgaaggcatgttcttctccgatatcaaggaagtgagccgcgccttctacgccaag
caggttggcctgcaggcgaaggtaaaagtgcgtatcgacgaagtggaaatcggtgaagac
ggcgagaagcgccagacccgcaccgtgtatgacaccaccgttggccgcgcgctgctgtgg
aacatcgtgccggacggtatgcccttcgacatggtcaaccagcccatgaagaagaaggcg
atctcccgcgtactgaacgagtgttaccgcaaggtaggcctgaaggcgaccgtcatcttt
gctgaccagctgatgtacaccggtttcgacttctccaccaagtccggttcctccatcggg
gtgaacgacttcgagatcccgtcggccaaggccgacctgatcgcttccgcagaagaggaa
gtgaaagagatcgagagccagttcgcttccggtctggtcaccgcgggcgagaaatacaac
aaggttatcgacgtttggtcccgtaccaacgacaaggtaacccaggcgatgatggccggt
atccgtaaggaaaaggtcatcgaccgcgaaggtaaagagaccgagcaggactccttcaac
tccgtgtacatgtacgccgactccggcgcgcggggttccgaggcccagatccgtcagctg
gccggtatgcgcggcctgatggcgcgtccggacggctccattattgaaaacgccattacc
gcgaacttccgtgaaggtctgagcgtactgcagtacttcatctccacccacggtgctcgt
aaaggtctggcggataccgcactgaaaaccgcgaactccggttacctgacccgccgtctg
gtggacgtggcccaggacgtggtcatcaccgagatcgactgtggcaccgatgaaggtctg
accatggcgccggtgatcgagggtggcgacgtgatcgagtccctgggtgaccgtatcctc
ggtcgcgttgtggcccgcgatgtgcccaagcccggcagcgacgagatcgcggtcccggct
ggcaccatgatcgacgaagcgtgggtagagcgcatcgaaggcatgggtatcgacgaagtt
atcgtgcgttctgcgatcacctgtgagactgcgcacggtatctgtgcccagtgctacggc
cgcgacctggcccgtggccaccgcgccaacccgggtgaggctgtgggcgttgtggctgcc
cagtccatcggtgaaccgggtacccagctgaccatgcgtaccttccacatcggtggtgcg
gcgagccgtgcttctgcggcggacagcatccaggtgaagctgggcggtaccgtacgtctg
cacaatgtgaagacggtgaaggccgcaagcggcaacctggtggcggtttcccgttccggt
gagctggcgattgccgacagcgccggtcgcgagcgcgagcgttacaagctgccctacggt
gcacagatcagtgttgacgagggtgccgaggttgacggtggcaagattgtggccaagtgg
gacccgcacacccacccgatcatcaccgaggttgccggttgggtgaaactgtccggtatg
gaagatggcctgtccatccgcaagcagaccgacgaaatcaccggcctgtcctccatcgag
gtgatcgatccggcagagcgcccggcagcgggtaaagacctgcgcccggctgtgaccctg
gtggatgagaacggtgaggagctgaccctggccagctccagcgcaccggcgcactatgcg
ctgccgccgcgcgcgatcctgagcctgaaagagggcgacaaggtgagcgtgggtgatgtt
atcgcgcgtattccgcaggaatccggcaaaaccaaggacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgtaagccgaaagagccgtccatcctggcggagatctcc
ggtactgtgtctttcggtaaagagaccaaaggcaaggtacgtctgcagatcaccccgaaa
gacggcaagccgctggccaatggcaaagactcctacgaggttctgattccgaaacaccgt
cagctgaccgtgttcgagggcgaaaccgtagagaagggcgaggttatttccgacggtccg
tccaacccgcacgatatcctgcgtctgaaaggcgtagaggaactggcgcgttacatcacc
aacgagatccaggaggtttaccgcctccagggtgtgaagatcaacgacaagcacatcgag
accatcgtgcgtcagatgctgcgcaaagttgaaattctggagatgggcgactccgagttc
atcaagggtgaacaggttgagtaccaggcggtcatcgagcagaacgagcgtctgcgtgcc
gagagcaaacagccggcgcagtacgagcgtctgctgctgggtatcaccaaggcctctctg
gcgaccgaatccttcctgtccgcggcctccttccaggagaccacccgcgtcctgaccgaa
gcggcggtaaccggcaaggaagacagcctgcgcggcctgaaggaaaacgtggtagtgggt
cgtctgatcccggccggtaccggtctcgcctaccacaccgagcgcaagcgcaagcgcact
gcgcaggtgagcttcggttatgccgaaggcccgtctgcggaagaggtagaagcggcgctg
accgaagccctgaaatcttccggggaataa
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integrated database retrieval system
