KEGG   Microbulbifer pacificus: R5R33_08250
Entry
R5R33_08250       CDS       T09537                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
mpaf  Microbulbifer pacificus
Pathway
mpaf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mpaf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    R5R33_08250 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpaf03019]
    R5R33_08250 (rnr)
   03016 Transfer RNA biogenesis [BR:mpaf03016]
    R5R33_08250 (rnr)
Enzymes [BR:mpaf01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     R5R33_08250 (rnr)
Messenger RNA biogenesis [BR:mpaf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     R5R33_08250 (rnr)
Transfer RNA biogenesis [BR:mpaf03016]
 Prokaryotic type
  tRNA degradation factors
   R5R33_08250 (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 WHD_RNase_R RNase_II_C_S1
Other DBs
NCBI-ProteinID: WOX07112
UniProt: A0AAU0N3N0
LinkDB
Position
complement(1906738..1909659)
AA seq 973 aa
MEAVLNQDKPNPSGIAEDPHADREAEKYEKPIPSREFLLDLLEQQPGPVSWEAVADLLSL
DDEDRREGVRRRLIAMSRDGQIASNRAGDFGVLDKMSLVRGRVIGHRDGFGFVSPGDGSD
DLYLSHRQMRKVFDGDEVLVRETPGGFRGKREGAVVRVIKHNTHQLAGRLYREDGVCFVR
PDNPRVNLDIMVAEGKCGEAKSGQYVVVDITLQPGRDNLPQGEVSEVLGDHLAPGMEIDV
AIRNYGIPHTWPASVLTQVEGIADEVLEGDKKARIDVRQLPLVTIDGEDARDFDDAVFCE
LLPDGNWKLLVAIADVSHYVAVDTPLDVEAHQRGNSVYFPDFVVPMLPEKLSNGLCSLNP
EVDRLCMVCEMRIDESGNILGYQFFEGVMRSHARFTYTQVGEMVDERDNRDSGLRKQYAA
LTPHIDNLHDLYRALRGARDRRGAIDFETTETRIIFDAARKIERIVPVVRNDAHKMIEEC
MLAANVCAAELMELAELPALYRVHDIPKKERLENVREYLGELGLRLEGGSEPQPSDYQTL
LQEVEGRPDFHIIQTMLLRSMNQAVYQPENRGHFGLDYRAYAHFTSPIRRYPDLLLHRGL
RWLIRNGSANPTAVAKKVRQAPGAHALTREEILPYGPPAMVELGEHCSMTERRADDATRD
VVSWLKCEYLQDHVGEVYRGVISAVTGFGLFVEIDDLYVEGLIHVTALPKDYYQFEQAQQ
RLVGERSGVRFHLGDGVTVQVARVDLEERKVDFTFVELHPRPSYKNPKYRKPKAAKKGIE
VSEVSIDQPRAKSHEKSRTGAESTSVSGRAMEMAVEFQQERKRKGKSDFSSSAAAEKGSP
WGAGLKKKAVTAVDEEPRPVRKRRVGDDEAEVMAPAPKKPVWKKPDQERPAAKASVWGTS
SANVATDEGAEPTGEQPGEFPRKKRGPSKSPTRKGGKRPAVAARKAAHKAAKSAVAKKAA
QKKSAKKKPGKKK
NT seq 2922 nt   +upstreamnt  +downstreamnt
atggaagctgttttgaatcaagacaaacccaatccctctggcatcgcggaagatccccac
gcggatcgcgaggcagaaaagtacgaaaagcccatccccagccgtgaattcctgctggac
ctgctggagcagcagcccggtccggtttcctgggaggcggtagcggacctgctcagtctc
gacgacgaggaccgccgcgagggcgtgcgtcgccgcctgatcgctatgagccgcgacggc
cagatcgccagcaaccgcgccggggacttcggcgtgctcgacaaaatgagcctggtgcgt
ggccgcgtgatcggccaccgcgatggtttcggcttcgtctcccccggtgacggcagtgac
gacctctacctgtcccaccgccagatgcgcaaggtgttcgacggcgacgaagtgctggtg
cgcgagactcccggtggcttccgcggcaagcgcgaaggcgcggtggtgcgcgtgatcaag
cacaacacccaccagctcgccgggcgcttgtaccgtgaagatggcgtgtgctttgtgcgc
ccggacaacccgcgcgtcaacctcgacatcatggtcgcggaaggcaagtgcggcgaggcc
aagagcggccagtacgtggtggtggacatcaccctgcagcccggtcgcgacaacctgccc
cagggtgaggtgagtgaagtactcggcgaccacctggcgccgggcatggagatcgatgtc
gccatccgcaactacggcatcccgcacacctggccggcctcggtgctgacgcaggtggag
ggcattgccgacgaggtgctggagggggacaaaaaggcgcgtatcgacgtgcgccagctg
ccgctggtgaccattgacggcgaagatgcgcgcgacttcgacgacgcggtattctgcgaa
ctgctgccggatggcaactggaaactgctggtggccatcgccgacgtctctcactacgtg
gcggtcgacacaccgctggatgtggaggcgcaccagcgcggcaactcggtgtacttcccg
gatttcgtggtgccgatgctgccggaaaagctgtccaacggcctgtgttccctgaacccg
gaagtggatcgcctgtgcatggtgtgcgaaatgcgcatcgacgagtccggcaatatcctc
ggctaccagttcttcgaaggggtgatgcgcagtcacgcccgtttcacttacacccaggtg
ggtgagatggtggacgagcgcgacaatcgcgacagcggtctgcgcaagcagtacgccgcg
ctcaccccgcacatcgacaatctgcacgacctgtacagggcgctgcgtggcgcccgcgac
cgtcgcggcgcgatcgattttgaaaccaccgagacgcggatcattttcgatgctgcgcgc
aagatcgagcgcatcgtgccggtggtgcgcaacgatgcgcacaagatgatcgaagagtgc
atgctcgccgccaacgtgtgtgcggcggagctgatggagctggcggagctaccggcgctg
tatcgggtgcacgatattccgaagaaggagcgcctggaaaatgtgcgcgaatatctcggt
gagctcggcctgcgcctcgaaggtggcagcgagccgcagcccagcgactaccagacgctg
ttacaggaagtggaagggcgcccggatttccacatcatccagaccatgctgctgcgctcc
atgaaccaggcggtgtaccagccggaaaatcgcggccatttcggtctcgactaccgcgcc
tacgcgcacttcacttcgcccatccgccggtatccggacctgctgttgcaccgtgggctg
cgctggttgatcagaaacggcagcgccaaccccactgccgtggcgaaaaaggtgcgccag
gcgcccggtgcccacgcgctcacgcgcgaggaaatcctgccctacggcccccccgcgatg
gtggagctgggcgagcactgctcgatgaccgagcgccgcgccgacgatgccacccgcgat
gtggttagctggctcaagtgcgagtacctgcaggaccatgtgggcgaggtataccgtggt
gtgatcagtgcggtgaccggctttggcctgtttgtcgagatcgacgacctgtatgtagag
gggttgatccacgtcaccgctctgcccaaggactattaccagtttgagcaggcgcagcag
cgccttgtgggcgagcgcagtggcgtgcgcttccatcttggcgatggcgttaccgtacag
gtggcgcgggtggacctggaggagcgcaaggtggatttcaccttcgtcgagctgcacccc
cgtcccagctacaagaatcccaagtaccgcaaaccgaaagcggcgaagaaaggcatagaa
gtgtcagaagtatctattgatcagcctcgtgcgaaatcgcatgaaaaatcccgcactggt
gccgagtccaccagtgtcagcggtcgcgccatggaaatggctgtagagttccagcaggag
cgcaagcgcaagggcaagtccgacttcagcagcagcgctgctgcagaaaagggcagcccc
tggggtgcaggcctgaaaaagaaagccgtgaccgctgtggacgaggagccgcgcccggtg
cgcaagcgcagggtgggtgatgacgaagcggaagtgatggcgcctgcgcccaaaaaaccg
gtgtggaaaaagcctgatcaggagcggcccgcggcgaaagcatcggtgtggggtacatcg
tctgcgaacgtagcgacggacgaaggcgcggagccgacgggcgagcagccgggtgaattt
ccaagaaagaaacgcggcccgagcaaaagcccgacccgcaagggcggtaagcgcccggct
gtagcggcgcgcaaggccgcccataaggcggccaagtctgcggtcgcgaaaaaggcggcg
caaaaaaaatccgcgaaaaagaaacctggcaagaagaagtaa

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