Microbulbifer pacificus: R5R33_12250
Help
Entry
R5R33_12250 CDS
T09537
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mpaf
Microbulbifer pacificus
Pathway
mpaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R5R33_12250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpaf03019
]
R5R33_12250
Enzymes [BR:
mpaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R5R33_12250
Messenger RNA biogenesis [BR:
mpaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R5R33_12250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_22
DUF8086
AAA_25
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WOX04510
UniProt:
A0AAU0MWX3
LinkDB
All DBs
Position
2845335..2846816
Genome browser
AA seq
493 aa
AA seq
DB search
MLFEDLGLVPEIARAVAEQGYTQPTPIQEQAIPVVMRGGDVMAAAQTGTGKTAGFTLPLL
HRLCAGERARNNQVRALVLTPTRELAAQVFDNVQSYSKYLPLRHSCVFGGVKINPQMMRL
RGGADILVATPGRLLDLYNQRAIKFDLLEALVLDEADRMLDMGFIHDIKKILKLLPERRQ
NLLFSATFSPEIRALAKGLVKDPVEIDVSPRNSTTKTVQQKLHPVDKSRKTALLSHLIRE
NNWHQALVFSRTKHGANRLAQQLEKDRITAAAIHGNKSQNARTKALADFKSGKVQILVAT
DIAARGIDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSADEIKQLRDIER
LIQKPIEREEVEGFEPDHQLPESGGKIGKGSQVRRGGNPRPQSAGNGSSTGNGKPSGNRS
GNRSGNRTGNGGGESRGGNANARSGNRSGGNNSGGNTSGGQNRNRNRSADGQGENRSQPN
RRRRSPQRRPETA
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgttgtttgaagatctcggccttgtgccggaaattgcccgcgccgttgcggagcagggc
tatacccaacctaccccgattcaggagcaggcgattcctgtggtgatgcgcggtggcgat
gtcatggccgcggcccagaccggtaccggcaagactgcgggcttcaccctgccactgctg
caccgcctgtgtgcgggcgagcgcgcgcgcaataaccaggtgcgcgcgctggttctcacg
cccacccgcgagctggcggcacaggtattcgacaatgtgcagagctattccaagtacctg
ccactgcgccacagctgcgtattcggtggggtgaaaatcaacccgcaaatgatgcgcctg
cgcggcggtgcggacattctggtggcgaccccgggccgtctgctggatctgtataaccag
cgcgcgatcaagttcgacctcctggaagcgctggtgctggacgaagccgaccgcatgctg
gacatgggctttattcacgacatcaagaaaatcctgaaactgctgccggagcgacgccag
aacctgctgttctccgcgaccttctcgccggaaatccgcgccctcgccaagggcctggtg
aaagacccggtggagatcgacgtaagcccgcgcaacagcaccaccaagaccgtgcagcag
aagctgcaccctgtggataagtcgcgcaagaccgcgctgctcagccacctgatccgcgaa
aacaactggcaccaggcactggtgttcagccgcaccaagcacggtgccaaccgtctggca
cagcagctggaaaaggaccgcatcaccgctgctgccattcacggtaacaagagccagaat
gcgcgcaccaaagccttggcggatttcaaaagcggcaaggtgcagattctggtggcgaca
gatatcgccgcccgcggtatcgacatcgaccagctgccgcaggtagtgaacttcgacctg
ccgaatgtgccggaggattacgtgcaccgtatcggccgcaccggtcgcgccggcgcgagc
gggcaggcggtttcactggtttccgcggacgagatcaagcagctgcgggatatcgagagg
ctgatccagaagccgattgagcgcgaagaggtggagggctttgagccggatcaccagctg
ccggagtccggtggcaagatcggcaagggcagccaggtgcgccgcggcggcaacccgcgt
ccgcagtccgctggcaacggcagctctaccgggaatggcaagccgtccggcaatcgttcg
ggcaaccgctccggtaatcgcactggaaatggcggcggcgagtcgcgcggtggcaatgcc
aatgcccgttccggcaaccgctctggtggcaataactccgggggtaatacgtccggtgga
caaaaccgcaatcgcaaccgcagcgccgatggtcagggcgagaatcgctcccagccgaac
cgccgcaggcgcagcccgcagcgccgtccggaaacggcctga
DBGET
integrated database retrieval system
