Microbulbifer pacificus: R5R33_14045
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Entry
R5R33_14045 CDS
T09537
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mpaf
Microbulbifer pacificus
Pathway
mpaf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpaf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
R5R33_14045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpaf03019
]
R5R33_14045
03009 Ribosome biogenesis [BR:
mpaf03009
]
R5R33_14045
Enzymes [BR:
mpaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
R5R33_14045
Messenger RNA biogenesis [BR:
mpaf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
R5R33_14045
Ribosome biogenesis [BR:
mpaf03009
]
Prokaryotic type
rRNA helicases
R5R33_14045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Flavi_DEAD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WOX04853
UniProt:
A0AAU0MWH3
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All DBs
Position
3294107..3295876
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AA seq
589 aa
AA seq
DB search
MTDNSQPAGFDQLGLPTEILDAVTKLGYETPSPIQAQTIPSLLQGRDVLGQAQTGTGKTA
AFALPMLASLDLRDKRPQALVLAPTRELAIQVAEACQSYAANLKGFHVAPIYGGADYRGQ
IQALKRGVQLIVGTPGRVMDHMRKGTLDLSSLKMLVLDEADEMLRMGFIDDVKWVLEQIP
EERQIALFSATMPREVASIAREHLHDPVEVKIKVKTETAETIRQRYWPVGGLHKMDALTR
ILEAEPVDATIIFVRTKNATVEVADKLAARGFASAALNGDMAQGMREQVIEKLKAGKLDI
VVATDVAARGLDVKRISHVINYDIPYDTEAYIHRIGRTGRAGREGDAILFVAPREQRMLR
TIERATKKSIERLDLPTAAAVNASRMEKFRQKITFTMGGRRDLAPFRDLVEKFLEDNDVD
PLDVAAALAAMAQGDQPLLLDEREPARQEFRERKPREFGDDFEDRKRKPRDKKPGFEKDS
KRIPGPDEGKERYRIEVGREHGVRPGSIVGAIANEVDLDSSYIGRIEIYPEYTTVDLPEG
MPQEIFQHLKKVRVNGRPMNIARFDESRVKSGGHTAPAFKKRKPKKSFD
NT seq
1770 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaattcccaacctgctggttttgaccagctgggtctgcctactgaaattctc
gacgccgtgaccaagctgggctacgaaacccccagcccgatccaggcacagactatcccg
tcactgctgcaaggccgcgatgtactgggccaggcccagaccggtaccggcaagaccgcc
gcattcgcactgccgatgctggcgagcctcgacctgcgcgacaagcgcccgcaggcactg
gtgctggcgccgacccgtgagctggccatccaggtggccgaggcctgccagtcctatgcg
gccaacctcaagggtttccacgttgcgccgatttacggtggcgccgactaccgcggccag
atccaggcgctgaagcgcggcgtgcaactgatcgtgggcaccccgggccgcgtgatggac
cacatgcgcaagggcaccctggacctgtcctcccttaaaatgctggttctcgacgaagcc
gacgaaatgctgcgcatgggctttatcgacgacgtgaaatgggtgctggagcagattccg
gaagagcgccagatcgcgctgttctccgccaccatgccgcgtgaagttgcctctatcgcc
cgcgagcacctgcacgatccggtggaagtaaagatcaaggtgaaaaccgagaccgccgag
accattcgccagcgttactggccggtgggcggcctgcacaagatggacgcgctgacccgt
attctcgaagccgagccggtggatgccaccatcattttcgtgcgtaccaaaaacgcgacc
gtggaagtggccgacaagctggccgcacgcgggtttgccagtgccgccctgaacggggac
atggcgcagggcatgcgcgagcaagtgatcgagaagctgaaagccggcaagctcgatatc
gttgtggccaccgacgttgctgcgcgcggtctggacgtgaagcgcatcagccacgtgatc
aattacgacattccctacgataccgaagcctacattcaccgtatcggccgtaccggccgt
gccggtcgcgaaggcgatgcgatcctgttcgtggcaccgcgtgagcagcgcatgctgcgc
actatcgagcgcgccaccaagaagtcgatcgagcgcctcgacctgccgaccgctgctgcc
gtgaatgcttcccgtatggaaaaattccgccagaaaattaccttcaccatggggggccgc
cgcgacctggcgccgttccgcgatctggtggaaaagttcctggaagacaacgacgtcgat
ccgttggatgtggccgcagctctggcggcgatggcgcagggcgaccagccgctgctgctg
gacgagcgcgagccggcgcgtcaggaattccgcgagcgcaagccgcgcgaattcggagac
gacttcgaagaccgcaagcgcaagccgcgtgacaagaagcccggtttcgagaaggacagc
aagcgtattccggggccggacgaaggcaaggagcgctaccgcattgaagtgggccgcgaa
cacggcgtgcgcccgggcagtatcgtcggcgccatcgccaacgaagtggatctcgacagt
tcctacatcggccgtatcgagatttaccccgagtacaccaccgtcgacctgccggaaggc
atgccgcaggaaatcttccagcacctgaaaaaggtgcgggtaaacggccgcccgatgaac
atcgcccgctttgacgaatcgcgcgtgaaatccggtggccacaccgcgccggcgttcaaa
aagcgcaagccgaagaagtctttcgactga
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