Microbulbifer pacificus: R5R33_17285
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Entry
R5R33_17285 CDS
T09537
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mpaf
Microbulbifer pacificus
Brite
KEGG Orthology (KO) [BR:
mpaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mpaf03032
]
R5R33_17285 (topA)
03400 DNA repair and recombination proteins [BR:
mpaf03400
]
R5R33_17285 (topA)
Enzymes [BR:
mpaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
R5R33_17285 (topA)
DNA replication proteins [BR:
mpaf03032
]
Prokaryotic type
DNA Topoisomerases
R5R33_17285 (topA)
DNA repair and recombination proteins [BR:
mpaf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
R5R33_17285 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
HC2
DUF2399
Motif
Other DBs
NCBI-ProteinID:
WOX05469
UniProt:
A0AAU0MYA0
LinkDB
All DBs
Position
4087003..4089744
Genome browser
AA seq
913 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKDFVVKSSIGHIRDLPTGASNKQPVDAKERARRAAETR
KLSKEDKEVYKRQKSHEQLIKRMGIDPDHNWEAHYEILPGKEKVVDELRKLAASADTVYL
ATDLDREGEAIAWHLREAIGGDEQRYRRVVFNEITKSAIQDAFKSPGPLDIDRVNAQQAR
RFLDRIVGYMVSPLLWEKVARGLSAGRVQSVAVRLVVEREREIRAFIPEEYWTLFADTET
AKSDALRLEVKKQGGENFRPVNEAQAMAALQALQSSNFEVTAREDKPTSSKPGAPFITST
LQQAASNRLGFSVKKTMMMAQRLYEAGYITYMRTDSTNLSAEAVASVRDFIGESYGEKYL
PENPNQYSSKEGAQEAHEAIRPSDVRVKPNMLSGMERDAERLYTLIWQQFVACQMTPAQF
TSTSVVVNAGDFELRTRGRVIRFDGFLKVAPPQSKKDEDLVLPDIKVGEKLNLKKLDPKQ
HFTKPPARFSEAALVKELEKRGIGRPSTYASIISTIQDRGYVRLENRRFYAEKMGDIVTD
RLSESFTDLMDYGFTASLEESLDAVAEGKKGWKALLDEFYSDFSKRLEQAQDADAGMRRN
APTDTNIECSQCGRHMQIRTGSTGVFLGCSGYALPPKERCTNTMNLVSGEEAIDADKDEE
AETRQLREKRRCPKCGTAMDSYLLDEQRKLHICGNNPDCNGFEVEKGTFKIKGYDGPLIE
CDKCGSDMQLKSGRFGKYFGCTNDACKNTRKLLKNGQAAPPKMDPVPMPELACEKVDDTY
ILRDGASGLFLAASQFPKNRETRAPLVKELLPHKDEIDSKYSFLFSAPTEDSEGRDTVVR
FSRKTQEQYVQSEEDGKATGWKAFYTGGKWLVEDSGSKSAAPKKAAAKKAPAKKATAKKA
AAKKAPAKKSPAK
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcactggtcatcgtcgagtcgccggcgaaggcaaaaacgatcaacaagtat
ctcggcaaggacttcgtcgtgaagtccagtattggtcatatccgggatcttcctaccggc
gcttccaacaagcagccggtggatgccaaggagcgcgcccgccgggcggcggaaacccgc
aagctgtccaaggaagataaagaagtctacaagcgccagaaaagccatgaacagctaatc
aagcgcatgggcatcgacccggaccacaactgggaggcccactacgagattcttcccggc
aaggaaaaggtggtggacgagctgcgcaagctcgcggccagtgccgataccgtctatctc
gcaacggacttggatcgcgagggggaggccattgcgtggcacctgcgcgaggccatcggt
ggcgatgagcaacgttaccgccgcgtggtgttcaacgaaatcaccaaatccgcgatccag
gatgcattcaagagtcccggtccgctggatatcgaccgagtaaatgcccagcaggcgcgt
cgtttcctcgatcgtatcgtgggctatatggtgtcgccgctgctgtgggaaaaagttgcc
cgcggtctgtccgccggtcgcgtgcagtccgttgccgtgcgtcttgtggtcgaacgcgag
cgggaaatccgcgcgtttattcccgaagagtactggacactgtttgcggataccgaaacg
gccaagtccgacgcactgcggctcgaggtgaaaaagcagggcggcgagaacttccgcccc
gtcaatgaagcgcaggcgatggctgcgctgcaggcgctgcagtccagcaactttgaagtc
accgcccgcgaagacaagcccaccagttccaagcccggtgcaccttttattacctccacc
ctgcagcaggcggccagtaaccgtctcggtttcagcgtgaagaaaaccatgatgatggcg
cagcgcctgtatgaggcgggttacatcacctatatgcgtaccgactctaccaatctgagc
gcggaggctgtggcctcggtacgggattttattggcgaaagttacggcgaaaaatacctg
ccggaaaatccgaatcaatacagcagcaaagagggtgcccaggaggcgcacgaggccatt
cgtccgtccgatgtgcgagtgaaacccaacatgctgtcgggtatggaacgtgacgccgag
cgtctgtataccctgatctggcaacagtttgtggcctgtcagatgacaccggcgcagttc
acttccacctctgtggtggtgaacgccggtgactttgagctgcgtacccgcggccgtgtg
atccgttttgacggtttcctcaaggtggcaccgccgcagagcaaaaaagatgaagatctg
gtgctgccagacatcaaggttggcgaaaagctcaatctcaaaaagctggacccgaagcag
catttcaccaagccgccggcacgtttcagtgaagcagcactggtaaaagaactggaaaag
cgcggtatcggccgcccgtccacctatgcctcgatcatttccaccattcaggatcgcggt
tatgtgcgcttggaaaaccgccgtttctacgcggaaaagatgggtgacattgtcacagac
cgtctgagcgaaagctttaccgatctgatggactacggcttcaccgcgagtctggaagaa
tctctggacgccgtggcagaaggtaaaaagggctggaaagcgttgctggatgagttctac
tccgatttcagcaagcgtctcgaacaggcccaggatgccgatgccggtatgcgccgcaat
gcgccaaccgacacgaatatcgagtgcagccagtgtggtcgccacatgcagattcgcacc
ggttccaccggcgtgtttctcggctgttccggctatgccctgccgcccaaagagcgctgc
accaacaccatgaacctggtgtctggggaggaggcgatcgacgcggacaaggacgaagag
gcggaaacccgccagctgcgagaaaaacgccgctgcccgaagtgtggcaccgcaatggac
agttacctgctggatgagcagcgcaaactgcatatctgcggtaataacccggactgcaac
ggtttcgaagtagagaagggcacatttaagatcaagggctacgatggcccgctgatcgag
tgcgataagtgtggcagcgatatgcagctgaagtccggccgcttcggcaaatacttcggc
tgtaccaacgacgcctgtaaaaatacgcgcaagttgctgaaaaatggccaggcggcgcca
ccgaaaatggacccggtaccgatgccggagcttgcctgtgaaaaagtggacgacacctac
atcctgcgggatggtgcttccggactgttccttgccgccagtcagttcccgaaaaatcgc
gaaacccgcgcaccgctggtgaaggagctgttgccgcacaaggacgagattgactccaag
tacagcttcctgttctctgcgccgacggaggacagcgaagggcgggataccgtggtgcga
ttcagtcgcaagactcaggagcagtatgtgcagtccgaagaggacggcaaggccaccggc
tggaaggctttctacactggcggcaagtggctggtagaagattccggcagcaaatctgcg
gcacccaagaaggcggcagcgaaaaaggccccggccaagaaagcgaccgcgaaaaaagcg
gcggccaaaaaggcacctgccaaaaaatcgccggcgaaatag
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