Microbulbifer pacificus: R5R33_17345
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Entry
R5R33_17345 CDS
T09537
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mpaf
Microbulbifer pacificus
Pathway
mpaf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mpaf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
R5R33_17345 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpaf03400
]
R5R33_17345 (mfd)
Enzymes [BR:
mpaf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
R5R33_17345 (mfd)
DNA repair and recombination proteins [BR:
mpaf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
R5R33_17345 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_30
ERCC3_RAD25_C
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
WOX05481
UniProt:
A0AAU0N0I4
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All DBs
Position
complement(4098936..4102412)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSQFPPLSPPAFRAPNDRQFWGQLHGASAALAILNAAKASRTPTLLIARNSQEAHQLEVQ
LKFFNKARRDSDAGDGLEIFQFPDWEILPYDTFSPHQDIISDRLATLYRLPQMGSGVVIA
PVSTLLHRLAPKDYIAGNALILKEGQKFDLNSQRRLLEQAGYHCVDTVYEHGEFAVRGAL
MDIFPMGSRLPYRIDLFDDEIESLRTFDPEDQRTVDRVEQIHLLPAREFPMHKPALAKFL
ERWHERFDCDPGPVSIYQDISAGIAPAGIEYYLPLFFDKCASLFDYLPEGSQVFVQGDLK
QPVESFWREAENRYQSRCGDLTRPILPPRQVLLDIDEFYGALKALPRAFFSAETLPEAEG
NYNFATRLPPSLPVNGKSEQPLAALQAYLMEYSGRVLFCAESGGRREALLELLGGIRIKP
KTFDSWQAFLDTDERLGITVAPLDQGMLLDDPQLNLIAEPQLFGDRVLQQRRRRKAKEDA
DNAVKNLAELRIGAPVVHIDHGVGRYKGLQSLEIDGQQAEFLTLEYGDGAKLYVPVASLH
LISRYSGADEELAPLHKLGSDTWQKAKRKAAEKVRDAAAELLDIYARREARVGHAFDNPG
LAYREFAAGFPFEETPDQQQAIEAVVADMLSDKPMDRLVCGDVGFGKTEVAMRAAFVAAH
GGRQVAMLVPTTLLAQQHFQSLQDRFADWPIAIEVVSRFRSNKEVDAIKERVADGKVDIL
VGTHKLLQSDLQFKNLGLLIIDEEHRFGVRQKEKLKSLRSEVDILNLTATPIPRTLNMAM
AGIRDLSVIATPPARRLSVKTFVRERDEALIKEAILREILRGGQVYFLHNEVKSIERIAR
ELQELVPEARIGVGHGQMRERELEQVMSDFYHKRFNVLVCTTIIETGIDVPTANTILIER
ADKFGLAQLHQLRGRVGRSHHQAYAYLLTPNKRAMTVDAVKRLEAISEAQDLGAGFTLAT
HDLEIRGAGELLGEEQSGQIQSVGFTLYMEMLDHAVKAIREGRVPNIDEPLESPAVDVNL
RVPALIPEDYLPDVHSRLIMYKRIASAEDSAALKELQVEMIDRFGLLPEPVKHLFRITEI
KLSATKMGIRKLEASASRGRIEFAENAKVNPLTLVKLVQNRPGQFQLQGANHLNFALDES
GPEHRLQQVNEVLIQLSQ
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagttcccccctttgtccccacccgcgttccgcgcgccgaatgaccgacaattc
tggggccagttacacggcgccagcgccgcgctggcgatcctgaatgccgcaaaagccagc
cgcacccctaccctgctgattgcacgcaacagccaggaagcgcaccagctcgaggtgcag
ctgaaattttttaacaaagcgcggcgagatagcgatgccggtgacggcctggaaattttc
cagtttcccgactgggagattcttccctacgacaccttttcaccgcatcaggacatcatc
tccgaccgactggccaccctctaccggctgccgcagatgggcagcggtgtggtcatcgcc
cccgtcagcaccctgctgcaccggctggcccccaaagattacatcgccggcaatgcactg
atcctgaaagaaggacagaaattcgatctcaacagccagcgccgactgctggagcaggcg
ggctaccactgcgtcgacaccgtatacgaacacggggaattcgcggtgcgcggtgcactg
atggatattttccccatgggcagcaggctgccctatcgcatcgacctgtttgacgatgaa
atcgaatccctgcgcaccttcgatccggaagaccagcgcactgtcgaccgggtggaacag
attcatctgctgccggcgcgggaattcccgatgcacaaaccggcactggcgaagtttctc
gagcgctggcacgagcgctttgactgtgacccgggcccggtttccatttatcaggacatc
agcgccggcattgcaccggcgggtatcgaatactacctgccgctgtttttcgacaaatgc
gcaagcctgttcgactacctaccggagggcagccaggtatttgtacagggagacctgaaa
caaccggtggaatctttctggcgcgaggcggaaaaccgctaccagagtcgctgcggtgac
ctcacccgaccgatcctgccaccgcgacaggtgctgctggatatcgacgagttttacggt
gccctgaaagcgctgccgcgtgcctttttctccgcggagacacttccagaggccgaggga
aattacaacttcgccacccgccttcccccgagcctgccggtcaacggaaagtccgagcag
ccgctggccgcactgcaggcctacctgatggaatactccgggcgggtgctgttctgcgcg
gagagcggcggccgccgcgaggcactgctcgaactgctgggcggcattcgcatcaagcca
aaaaccttcgattcctggcaggcattcctcgacaccgacgaacgcctcggcattaccgtc
gcccccctcgatcagggcatgctgctggatgatccgcagctcaacctcatcgccgaacca
cagctgtttggcgaccgggtactgcaacagcggcgacgcagaaaagccaaggaagatgcg
gacaacgcggtcaagaatctggcagaactgcgcatcggtgcaccagtggtgcatatcgat
cacggtgtcggccgctataaggggctgcagagcctcgagatcgacggccagcaggcggag
ttcctgacactcgaatacggcgatggcgccaagctgtatgtgccggtggcgagcctgcac
ctgatcagccgctattccggtgccgacgaagaacttgcgccgctgcacaagctgggcagt
gacacttggcaaaaagccaaacgcaaggctgccgagaaagtccgcgacgccgccgccgag
ctgctcgacatttacgctcgtcgcgaggcgcgggtcggccatgcgtttgacaaccccggg
cttgcctaccgcgaattcgccgccggcttcccgtttgaagaaacccctgaccagcagcag
gccatcgaagcggtggtggccgacatgttgtccgacaaacccatggatcgcctggtgtgc
ggcgatgtgggcttcggcaaaaccgaagtcgccatgcgcgcggccttcgttgccgcccac
ggcggtcgccaggtggcgatgctggtacccaccaccctgctcgcgcagcagcatttccag
tcgctgcaggaccgctttgcggactggcccatcgcgatcgaagtggtatcgcgctttcgc
agcaacaaggaagtggatgcgatcaaggagcgggtggcagatggcaaggtggacattctt
gtcggcacccacaaactgctgcagagcgatctgcagttcaagaacctggggctgctgatc
atcgacgaggagcaccgcttcggtgtccgccagaaggaaaaactgaagagcctgcgctcg
gaagtggacatcctgaacctcaccgcgacgccgattccgcgcaccctgaacatggccatg
gccggcatccgcgatctttccgtgattgccacaccaccagcgcgacgcctgtcggtgaag
acctttgtgcgcgagcgcgacgaagcactgatcaaggaagccatcctgcgggagatccta
cgcggtggccaggtgtacttcctgcacaacgaggtgaagagtatcgagcgcatcgcgcgc
gaactgcaggaactggtgccggaagcgcgcatcggcgtcggccacggccagatgcgcgag
cgcgaactggaacaggtgatgagtgacttctaccacaagcgcttcaacgtgctggtgtgt
accaccatcattgaaaccggtatcgatgtacccactgccaacaccattctgatcgagcgc
gccgacaaattcggtctcgcgcagctgcatcagctgcgcgggcgtgtgggccgttcccac
caccaagcctacgcctacctgctgacgccgaacaagcgcgccatgaccgttgacgcggta
aagcgcctggaagccatcagcgaagcccaggacctgggggccggtttcaccctcgctacc
cacgacctggaaattcgcggtgccggcgagctgctgggcgaggaacagagcggccagatc
cagagtgtgggtttcaccctgtatatggagatgctggatcacgcggtcaaagcgatacgc
gaagggcgcgtacccaatatcgacgagccgctggagtcgcccgcggtggatgtgaacctg
cgggtgccagcgctgattccggaggactacctgccggacgtgcacagccgcctgatcatg
tacaagcgcattgccagtgcagaggattccgccgcgctgaaagagctgcaggtagagatg
atcgaccgctttggcctgctgccggagccggtcaaacacctgttccgcatcaccgagatc
aagctcagcgcgaccaaaatgggcatccgcaagctggaggcctccgccagccgcggccgt
attgaattcgcggaaaacgccaaggtgaaccccctgaccctggtcaaactggtacagaac
cgaccgggtcagttccagttacagggggccaaccacctgaacttcgcactcgatgagagt
gggccggagcaccggctgcagcaggttaacgaggtattgatacagctgtcgcaatag
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integrated database retrieval system
