Mycobacterium paragordonae: C0J29_05445
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Entry
C0J29_05445 CDS
T06847
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mpag
Mycobacterium paragordonae
Pathway
mpag03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mpag00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C0J29_05445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpag03021
]
C0J29_05445
03400 DNA repair and recombination proteins [BR:
mpag03400
]
C0J29_05445
Enzymes [BR:
mpag01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C0J29_05445
Transcription machinery [BR:
mpag03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C0J29_05445
DNA repair and recombination proteins [BR:
mpag03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C0J29_05445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
AYE94318
LinkDB
All DBs
Position
1172654..1176604
Genome browser
AA seq
1316 aa
AA seq
DB search
MLDVNFFDELRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMVVERKAVEDQRDADLEARAQKLEAD
LAELEAEGAKADAKRKVRDGGEREMRQLRDRAQRELDRLEDIWSTFTKLAPKQLIVDENL
YRELQDRYGEYFTGAMGAESIQKLIETFDIDAEAENLREVIRSGKGQKKLRALKRLKVVA
AFQQSGNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLFYLTTEVDGDKGEYV
AAAKDTAEVGVYSSPAEAIMAADRGVLSVRAKIKVRLTQLRPPAELEAELFGANGWRPGD
AWVAETTLGRVLFNELLPLGYAFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FYWATRSGVTVSMADVLVPPRKKEILDAYEERAEKVEKQFQRGALNHDERNEALVEIWKE
ATDEVGQALREHYPSDNPIITIVESGATGNFTQTRTLAGMKGLVTNPKGEFIPRPIKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREHDCQTERGIVVE
LAERQPDGTLIRDPYIETSAYARTLGADAVDEAGNVVVARGEDLGDPSIEALLAAGITQI
KVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFHQGGV
GEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLEDGERFYKITIVPDDGGEEVVYDKL
SKRQRLRVFKHEDGSERVLADGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQE
VYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTEFLPGSLIDRAEFEAENRRVVAEGGEP
AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPA
GTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
gtgttagacgtcaacttcttcgatgaactccgaatcggcctggcgaccgcggaggacatc
cgtcagtggtcctacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggcctgttctgcgagaagatcttcggaccgactcgcgactgggagtgc
tactgcggcaagtacaagcgggtgcgcttcaagggcatcatctgtgagcgctgcggcgtc
gaggtgacccgcgcgaaggtgcgccgtgagcggatggggcacatcgagctggccgccccg
gtcacgcacatctggtacttcaagggtgtgccgtcgcgcctgggatacctgctggacctg
gccccgaaggacctggaaaagatcatctacttcgccgcctacgtgatcaccgcggtcgac
gacgagatgcggcacaacgagctctcgacgctcgaggccgaaatggtggtggagcgcaag
gccgttgaggatcagcgcgacgccgacctggaggcccgcgcccagaagctcgaggcggac
ctggccgagctggaggccgagggcgccaaggccgacgccaagcgcaaggtgcgcgacggc
ggcgagcgcgagatgcgtcagttgcgcgaccgtgcccagcgtgagctggaccggctggag
gacatctggagcaccttcaccaagctggcccccaagcagctgatcgtggacgagaacctc
taccgcgagctgcaggaccgctatggcgagtacttcaccggtgccatgggcgcggagtcg
atccagaagttgatcgagacttttgatatcgacgccgaggccgagaacctgcgtgaggtc
atccgaagtggcaaggggcagaagaagcttcgtgctctgaagcgcctgaaggtggtcgcc
gcgttccagcagtcggggaactcgccgatgggcatggtgctggacgcggtcccggtgatc
ccgccggagctgcgtccgatggtgcagctcgacggtggccggttcgccacgtccgacctc
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaggagtcggtggacgcg
ctgttcgacaacggccgtcgtggccggcccgtcaccgggcccggcaaccgtccgctgaag
tcgctgtccgacctgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagttgcaccag
tgcggtctgcccaagctgatggcactcgagctgttcaagccgttcgtgatgaagcgtctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtggagcgccagcgt
ccgcaggtgtgggacgtgcttgaagaggtcatcgccgagcacccggtgctgctgaaccgt
gcaccgactctgcaccggctgggcatccaggccttcgagccgatgctggtggaaggcaag
gccattcagctgcacccgttggtctgtgaggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctgccgctgagcgcggaggcccaggccgaggcgcgcatcctgatgctg
tcgtcgaacaacatcctgtcgcccgcgtcgggccgtccgctggccatgccgcgtctggac
atggtgaccgggctgttctacctgaccaccgaggtcgatggtgacaagggcgaatacgtt
gcggccgcgaaggacacggcggaggtgggtgtctactcttcgccggcggaggccatcatg
gccgccgaccgcggtgtgctgtcggtacgggcgaagatcaaggtgcggctgacccagctg
cgtccgcctgccgagctggaggccgaactgttcggcgccaacggctggcggccgggcgac
gcctgggtggctgaaaccaccctgggccgcgtgcttttcaacgaactgctgccgctgggc
tacgcgttcgtgaacaagcagatgcacaagaaggtgcaggccgcgatcatcaacgatctc
gccgagcgttacccgatgatcgtggtcgcgcagaccgtcgacaagctcaaggatgccggc
ttctactgggcgacccggagcggcgtgacggtctcgatggccgacgtgctggtgccgccg
cgcaagaaggagatcctggacgcctacgaagagcgtgcggaaaaggtcgaaaagcagttc
cagcgtggtgctttgaaccacgacgaacgcaacgaggccctggtcgagatctggaaggaa
gccaccgacgaggtcggtcaggcactccgggagcactacccgagcgacaacccgatcatc
acgatcgtggagtcgggcgccacgggtaacttcactcagacccggacgctggccggcatg
aagggcctggtgaccaaccccaagggtgagttcattccgcgcccgatcaagtcgtcgttc
cgcgagggcctgaccgtgctggagtacttcatcaacacgcacggtgctcgaaagggtctg
gcggacacggcacttcgtaccgccgactccggttacctgacccgtcgtctggtcgacgtc
agccaggacgtgatcgtgcgcgagcacgactgccagaccgagcgcggcatcgtcgtcgaa
ctggccgagcgtcagcccgacggcaccctgatccgtgacccgtacatcgaaacctcggcg
tacgcacggactttgggcgccgacgcggtggacgaggccggcaacgtcgtcgtcgcgcgc
ggcgaggacctcggcgacccgtcgatcgaggccctgctggcggcggggatcacgcagatc
aaggtgcgctcggtgctgacctgcaccaccggcaccggcgtctgcgccacctgctacgga
cgctcgatggccaccggcaagctggtcgacatcggcgaggccgtgggcatcgtggccgcc
cagtccatcggtgagcccggcacgcagctgaccatgcgtaccttccaccagggtggtgtg
ggtgaggacatcaccggcggtctgccgcgtgtccaggagctgttcgaggcccgcgtgccg
cgtggcaaggcgcccatcgccgatgtcaccggtcgggtgcgtctcgaggacggcgagcgc
ttttacaagatcaccatcgtccccgacgacggtggcgaggaagtggtctacgacaagctg
tccaagcgtcagcgtctgcgggtgttcaagcacgaggacggctccgagcgggtgctcgct
gacggcgaccacgtcgaggtgggccagcagctgatggaaggctcggccgacccgcacgag
gtgctgcgtgtgcagggcccgcgtgaggtgcagatccacctggtccgcgaggtccaggag
gtctaccgggcccagggtgtgtcgatccacgacaagcacatcgaggtgatcgtccgccag
atgctgcgccgcgtcaccatcatcgactcgggctcgacggagttcctgcccggctcgctg
atcgaccgtgcggagttcgaggcggagaaccgccgggtggtggccgagggcggcgagccc
gccgccggccgtccggtgctgatgggtatcacgaaggcgtcgctggccaccgactcgtgg
ctgagtgcggcgtcgttccaggagaccacgcgagtgctgaccgatgcggcgatcaactgc
cgcagcgacaagctcaacggtctgaaggagaacgtgatcatcggaaagctgatcccggcc
ggtaccggtatcaaccgctaccgcaacatccaggtgcagcccaccgaggaggcccgggcc
gctgcgtacacgatcccgtcctacgaggaccagtactacagcccggacttcggccaggcg
accggtgccgcggttccgttggacgactacgggtacagcgactaccggtag
DBGET
integrated database retrieval system
