Mus pahari (shrew mouse): 110312775
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Entry
110312775 CDS
T05929
Symbol
Pan3
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110312775 (Pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110312775 (Pan3)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110312775 (Pan3)
mRNA degradation factors
3'-5' decay
Pan complex
110312775 (Pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
Pkinase
zf_CCCH_4
zf-CCCH_4
Torus
Motif
Other DBs
NCBI-GeneID:
110312775
NCBI-ProteinID:
XP_021042306
Ensembl:
MGP_PahariEiJ_G0024606
LinkDB
All DBs
Position
23:37521513..37639665
Genome browser
AA seq
889 aa
AA seq
DB search
MNSGGGGGLPPPSAAASPSSSSLAAAVAVAVAASSGVGGVPGGPAAAAAAGVKLKYCRYY
AKDKTCFYGEECQFLHEDPAAGAAPGLGLHSNSVPLALAAAAGAAFPPGALPGGGAGPPA
GPKKPELSVPGAATAGGGLDGPRVAIPGMDGGALTDTSLTESYFSTSFIGVNGFGSPVET
KYPLMQRMTSSSSSPSLLNDSAKPYTGHDLLTSSASSLFNDFGALNISQRRKPRKYRLGM
LEERLVPMGSQARKAKNPIGCLADRCKSGVPINMVWWNRVTENNLQTPNPTASEFIPKGG
STSRLSNVSQSNMSAFSQVFSHPSMGSPATAGLAPGMSLSAGSSPLHSPKITPHTSPAPR
RRSHTPNPASFMVPSSASTPANNPVPQTPSSGQVIQKETVGGTTYFYTDTTPAPLTGMVF
PNYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQIDQADMPAVPTEVDS
YHSLFPLEPLPPPNRIQKSSNFGYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMVLVD
MWKKIQHSNIVTLREVFTTKAFAEPSLVFAYDFHAGGETMMSRHFNDPNSDAYFTKRKWG
QHDGPLPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPTKILITSKTRLRVNC
VGVFDVLTFDNSQNNNPLALMAQYQQADLISLGKVVLALACNSLAGIQRENLQKAMELVT
INYSSDLKNLILYLLTDQNRMRSVNDIMPMIGARFYTQLDAAQMRNDVIEEDLAKEVQNG
RLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLFRDHLFHQVTEAGAPWIDLSHIISC
LNKLDAGVPEKISLISRDEKSVLVVTYSDLKRCFENTFQELIAAANGQL
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggcggcggcggcggcctcccgcccccctcggccgctgcctcgccgtcgtcg
tcctcgctggcggcggccgtggcggtggcggttgcggcctcgtccggcgtcgggggcgtc
cccggcgggccggcggcggcggcggcggcgggcgtgaagctcaagtactgccgctactac
gccaaggacaagacgtgcttctacggcgaggagtgtcagttcctgcacgaggacccagcc
gccggcgcggccccggggctcggcctccatagcaacagcgtcccgctggcgctggcggcc
gcggccggggccgcctttcctcccggagcgctcccgggcgggggagcggggccgcccgcc
ggccccaagaagccggagctgagcgtcccgggggcggcgaccgcgggcggcggactcgat
ggcccgcgggtggcgattcctggaatggatggaggtgctttaactgacacaagtctcaca
gagtcctatttcagcaccagctttattggagtcaatggatttggaagccctgtagaaaca
aagtatcccttgatgcagagaatgactagtagtagcagctccccaagccttctaaatgac
agtgccaagccatatacaggccacgatcttctgacttcatctgcttcatccttgtttaat
gacttcggtgccctcaacatctcccagagaaggaagccaaggaagtatcgcctggggatg
ctggaggagaggctagttccgatgggatcacaggcacgaaaagcaaagaaccctattggc
tgccttgccgacaggtgtaaatcaggagtacccatcaatatggtttggtggaacagagtc
acagaaaacaatttacagacaccaaatcctactgcaagcgaatttatacctaaaggagga
tcaacctccaggctgagtaacgtgtcccagtcaaatatgtctgccttctctcaagttttc
tctcacccatccatgggaagtcctgctactgctggattagcaccaggaatgtcactgtct
gctggatcttcccctctccattcccccaaaattactccacacacctctcctgctcctaga
agaagaagccacactccaaacccagcaagtttcatggtgccgtctagtgcctccactcct
gccaataaccctgttcctcagactccgtcctctggtcaggtgatccagaaggagactgtc
ggggggacgacttacttctatacagatacaactccagcacctttgactggaatggtattt
ccaaactatcatatttatcctccaaccgcacctcatgttgcttatatgcagccaaaagca
aatgcaccttccttctttatggccgacgagctccgacaggagctgatcaacagacattta
ataacgatggctcaaattgatcaagcagatatgccagcagtccccacagaagttgacagc
taccatagcctgttccctctagaaccactgccaccccccaaccggatacagaaatcaagt
aattttggatatatcacgtcttgttacaaagctgtaaatagcaaagatgatctgccatat
tgccttcggaggatacatggttttcgtcttgttaacacaaagtgcatggtgttggttgat
atgtggaaaaaaattcagcactcaaatattgtaactctgcgtgaagtgtttaccactaaa
gcatttgccgagccttctctggtgttcgcctatgatttccatgctggaggagaaactatg
atgagcagacactttaatgacccaaattctgatgcctacttcacaaagagaaagtggggc
cagcatgatggaccactgcccaggcaacatgctggattgttaccagagtctctcatctgg
gcatacattgtccagctgagttctgctctgcgtaccattcatacagcaggtttagcctgt
agagtaatggacccaacgaagattctaataaccagcaaaacaaggttacgagtaaattgt
gtaggagtttttgatgttttaacatttgataacagtcaaaataataatcctttggcatta
atggctcagtaccagcaagcagatctgatatcattaggaaaagttgtgttggctttggct
tgcaactctttggcaggaattcagcgagagaatttacagaaagccatggaattggtgaca
atcaactactcctctgacctgaagaacctcatcttgtacttgttgactgaccaaaacagg
atgcggagtgtgaatgacatcatgcccatgattggtgctcggttttacactcaattggat
gctgctcaaatgagaaatgatgttatcgaggaagaccttgctaaggaggttcaaaatgga
agactgtttaggcttctagcaaaattgggaacaatcaacgagaggccggagtttcagaag
gatccaacctggtcagagactggagaccgatacctgttgaaactctttagggatcatctt
tttcatcaggtgacagaagcaggtgctccctggatcgacctcagtcacatcatttcttgt
cttaacaagctagatgctggtgtgccagaaaaaatcagcctgatttccagagacgagaag
agcgtactggtggtgacatacagtgacctaaaacgctgctttgagaatacctttcaagaa
ttgattgcggctgcaaatggtcagttgtag
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