Mus pahari (shrew mouse): 110312892
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Entry
110312892 CDS
T05929
Symbol
Ddx55
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX55
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mpah03009
]
110312892 (Ddx55)
Enzymes [BR:
mpah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110312892 (Ddx55)
Ribosome biogenesis [BR:
mpah03009
]
Eukaryotic type
Pre-60S particles
Helicases
110312892 (Ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
SBF_like
Motif
Other DBs
NCBI-GeneID:
110312892
NCBI-ProteinID:
XP_021042492
Ensembl:
MGP_PahariEiJ_G0024335
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All DBs
Position
23:14497660..14513973
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AA seq
600 aa
AA seq
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MEHVTEGAWESLQGPLHPRVLAALRELGFPRMTPVQSATIPLFMKNKDVAAEAVTGSGKT
LAFVIPILEILLRREEKLKKNQVGAIIITPTRELAIQIAEVLSHFTKHFPQFSQILWIGG
RNPGEDVERFKQHGGNIIVATPGRLEDMFRRKSEGLDLASCVKSLDVLVLDEADRLLDMG
FEASINTILEFLPKQRRTGLFSATQTQEVENLVRAGLRNPVRTSVKEKGVAASSTQKTPS
HLENHYMICKADEKFNQLVHFLRSRQQEKHLVFFSTCACVEYYGKALEALMKKVKILCIH
GKMKYKXNKIFMEFRKLPSGILVCTDVMARGIDIPEVNWVLQYDPPSNASAFVHRCGRTA
RIGHGGSALVFLLPMEEAYINFLAINQKCPLQEMSLQRNTVDLLPKLRAMALADRAVFEK
GMKAFVSFVQAYAKHECSLIFRLKDIDFAGLARGFALLRMPKMPELRGKQFPDFVPADID
TDTIPFKDKIREKQRQKLLEQKRKERTENEGRRKFIKNKAWSKQKAKKERKKKMNAKRKK
DEGSDVDDEDMEELLNDTRLLKKFKKGKITEEEFEKGLLTSAKRTVQLTGLGVSDSEEDS
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
atggagcacgtgacggagggtgcctgggagtcgctgcaggggccgctgcatcctcgggtg
ctcgcagcactgcgcgagttgggcttcccccgcatgacgccggtgcagtctgccaccatc
cctctgttcatgaaaaacaaagatgtcgccgcagaagctgtgactggtagtggaaaaacc
ctggcttttgtcatccctatcctggagattcttctgagaagggaggagaagttaaagaag
aaccaggtaggagccatcatcatcaccccgactcgggagctggccattcagatcgctgag
gtcctgtcacacttcacaaagcacttcccgcagttcagccagattttgtggatcggaggc
cggaaccctggagaagatgtggagaggttcaaacagcatggcgggaacatcattgtggcc
accccaggccgcctggaggacatgttccggaggaagtctgagggtctggacctggccagc
tgtgtgaagagcctggatgtgctggtcctggacgaggcagacagacttcttgacatgggc
tttgaggcaagcatcaacacaatcctggagtttttgccaaagcagaggagaacaggcctc
ttctcagccacacagacacaggaagtggagaacttggtgcgagcaggcctccggaaccct
gtccgaacctcagtgaaggagaagggtgtggcagccagcagcacccagaagaccccatcc
cacctggagaaccactatatgatctgtaaggcagatgagaaattcaaccagctggtccac
ttcctccggagccgtcagcaggagaagcacttagtcttcttcagcacatgtgcgtgtgtg
gaatactacgggaaggccctggaggcgctcatgaagaaagtgaagatcctgtgcatccac
gggaagatgaagtacaagnncaataagatcttcatggagttccgcaagctgcccagtggg
atcttggtgtgcaccgatgtgatggcccggggaattgatatacccgaagtaaactgggtt
ttgcagtacgaccctcccagcaatgccagtgccttcgtgcatcgctgtggacgcacagcc
cgcattggccacggtggcagcgctctggtgttcctgctacccatggaggaggcctacatc
aacttcttggccatcaaccagaaatgccccctgcaggagatgagcctccagagaaacact
gtagaccttctgccgaagctccgggccatggccctggctgacagagccgtgttcgagaag
ggcatgaaagcctttgtgtccttcgtgcaggcttatgcgaagcacgagtgtagcctcatc
ttcaggctgaaggacattgactttgccgggcttgctcgaggctttgccctgctcaggatg
cccaagatgcctgagctaaggggaaagcagtttcctgactttgtaccagcggacatcgat
accgataccattccatttaaagataagattagagaaaaacagaggcagaaacttctggag
caaaaaagaaaagagaggacagaaaatgaaggaaggagaaaattcatcaaaaataaagct
tggtcgaagcagaaggccaagaaggaaaggaagaagaagatgaatgcaaaacggaagaag
gatgagggttctgatgtcgatgatgaagacatggaggaactccttaatgatacgaggctc
ttgaaaaaatttaaaaaaggtaaaatcacagaagaagaatttgagaaagggttgttgaca
agtgccaaaaggacagtccagctgacaggtttaggtgtctcagactcggaagaggacagt
tga
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