Mus pahari (shrew mouse): 110313486
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Entry
110313486 CDS
T05929
Symbol
Upf3b
Name
(RefSeq) regulator of nonsense transcripts 3B isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03013
Nucleocytoplasmic transport
mpah03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110313486 (Upf3b)
03015 mRNA surveillance pathway
110313486 (Upf3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110313486 (Upf3b)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110313486 (Upf3b)
mRNA cycle factors
P-body specific factors
110313486 (Upf3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
110313486
NCBI-ProteinID:
XP_021043453
Ensembl:
MGP_PahariEiJ_G0031543
LinkDB
All DBs
Position
X:complement(28960150..28978085)
Genome browser
AA seq
485 aa
AA seq
DB search
MKEEKDHRPKEKRVTLFTPQGATGGCIGATAEGAKGDDRQDRYRDKKEALSKVVIRRLPP
TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDILLFRDRFDGYVFL
DNKGQEYHAIVEFAPFQKAAKKKIKKRDSKVGTIEDDPEYRKFLESYATDNEKMTSTPET
LLEEIEAKNRELIAKRTTPLLSFLKNKQRMREEKREERRRREIERKRQREEERRKWKEEE
KRKRKDIEKLKKIERIPERDKIRDEPKIKVHRFLLQAVNQKNLLRKPEKGDEKELDKRDK
TKRLDKENLNEERASGHSYTLSRRSDVELKDEKPKRPDEQGVRDYRDRDREYERDQERMI
RERERLKRQEEERRRQQQKERYEKEKAFKRKEEEMKREKEALRDKGKKSENTESICSLEK
IEKKEEVVKRDRIRNKDRPAMQLYQPGARSRSRLCPADDNIKPGDSPVDKKQESGISHRK
EGGEE
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaagaaaaagaccataggcctaaggagaaacgagtcaccctgtttacaccgcag
ggcgccacaggcggctgtattggagctactgccgaaggcgccaaaggggacgataggcag
gatcgctacagggacaagaaagaagctttgagcaaggtggtaattcgaagattacctccc
actttgaccaaggaacagcttcaggaacatcttcaacctatgcctgagcatgattatttt
gagtttttttctaatgatacaagcctttatcctcatatgtatgcccgagcatatatcaac
tttaaaaaccaagaagacattcttttattcagggaccgatttgatggctatgtattcctt
gacaataagggtcaggaatatcatgctatagtagaatttgcaccatttcaaaaagctgca
aaaaagaagattaagaaaagagattcaaaagttgggactatcgaggatgatccagaatac
agaaaatttttggagagttatgccacagacaatgagaaaatgacatctactccagagaca
ttgctggaggaaattgaagccaaaaatcgagaattaatagctaaaaggacaacaccactt
ttgagcttcctgaagaacaagcagagaatgagagaagaaaagagagaagaaaggaggaga
cgggaaatagagaggaaaagacagagagaagaagagagaagaaaatggaaagaagaggag
aaacgaaaaagaaaagatatagaaaaactaaagaagattgaaagaattccagaaagggac
aaaataagggatgagccaaagattaaggtacacaggtttctgttacaagctgtgaatcag
aaaaatctgctcaggaagccagaaaaaggagatgaaaaagaacttgataaaagagacaaa
accaagagactggacaaagaaaatctgaatgaagaaagagccagtgggcacagttacact
ctgtccaggcgttctgatgtcgaactgaaggatgaaaagccaaagaggcctgatgagcag
ggtgtcagagattacagagacagggaccgggagtatgagagggatcaggagcgcatgatc
cgcgaaagagagaggctgaagcggcaagaagaagaacgccggaggcagcagcagaaagaa
cgctatgagaaagagaaggcttttaagcgaaaggaagaagaaatgaagagagagaaagag
gcacttcgagataaaggaaagaagagtgagaatacagaatcaatatgctcgttagaaaaa
attgaaaaaaaagaggaagtggttaagagagaccgcataaggaacaaggatcgaccagct
atgcagctttaccaaccaggagctcgaagccgaagccgactctgtcccgccgatgacaac
atcaagcctggagattccccagtggacaaaaagcaggaaagtggtattagccatagaaaa
gaaggaggagaggagtga
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