Mus pahari (shrew mouse): 110315950
Help
Entry
110315950 CDS
T05929
Symbol
Polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1 isoform X1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
110315950 (Polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpah03021
]
110315950 (Polr1a)
Enzymes [BR:
mpah01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
110315950 (Polr1a)
Transcription machinery [BR:
mpah03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
110315950 (Polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
RNA_pol_3_Rpc31
Motif
Other DBs
NCBI-GeneID:
110315950
NCBI-ProteinID:
XP_021045609
Ensembl:
MGP_PahariEiJ_G0022230
LinkDB
All DBs
Position
2:89850624..89916128
Genome browser
AA seq
1716 aa
AA seq
DB search
MLASKHTPWRRLQGISFGMYSAEELKKLSVKSITNPRYVDNLGNPSANGLYDLALGPADS
KEVCSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVIHLL
ICQLRVLEVGALQAVYELERILSRFLEETVDPSSFEIQEELEEYTSKILQNNFLGSQGAH
VKNVCESRSRLVAHFWKTHMTAKHCPHCKTGRSVVRKEHNSKLIITYPAAVGKKSDQKDA
ELPEGIPAAPGIDEAQMGKRGYLTPSSAQEHLFAIWKNEGFFLNSLFSGLDDLSMESSFN
PSMFFLDFIVVPPSRYRPINRLGDQMFTNGQTVNLQAVMKDAVLIRKLLALMAQEQKLPC
EMTKLTIDKENDSSVAIDRSFLSLLPGQSLTDKLYNIWIRLQSHVNIVFDSDMDKLMLEK
YPGIRQILEKKEGLFRKHMMGKRVDYAARSVICPDMYINTNEIGIPLVFATKLTYPQPVT
PWNVQELRQAVINGPNVHPGASMVINEDGSRTALSAVDAAQREAVAKQLLTPATGAPKPQ
GTKVVCRHVKNGDILLLNRQPTLHRPSIQAHRAHILPEEKVLRLHYANCKAYNADFDGDE
MNAHFPQSELGRAEAYVLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQY
MELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDYTPLNLSGKAKIGS
KAWMKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLVHCCYEIYGGET
SGRVLTCLARLFTAYLQLYRGFTLGVEDILVKPNADVMRQHIIEESTQCGPRAVKAALNL
PEAASCDEIQGKWQDAHLGKDQRDFNMIDMKFKEEVNHYSNEINKACMPLGLHRQFPENN
LQMMVQSGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFEPYEFTPRAGGFVTG
RFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVIQYDLTVRDSDGS
VVQFLYGEDGLDIPKTQFLQPKQFPFLASNYEVIMKSKHLHEVLSRADPQKVLRHFKAIK
KWHHKHSSALLRKGAFLSFSQKIQAAVKALNLKGKTQNGRSPETQQMLQMWYELDEQSRW
KYQKRAAPCPDPSLSVWRPDIYFASVSETFEKKIDDYSQEWAAQAEKSYKKSELSLDRLR
TLLQLKWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILM
VASANIKTPMMSVPVFDTKKALKKVKSLKKRLTRVCLGEVLQKVDIQESFSMGKKQSKFR
VYALRFQFLPHAYYQQEKCLRPEDILHFMETRFFKLLMEAIKKKNSKASAFRSVNTRRAT
QKDLNDTEDSGRNQREEEKDEEEEGNIVDAEAEEGDADASDTRRKEKQEEEVDYESEEEG
EEEEEEDVQEEGNIKGEGVHQGHEPDEEDYIGLEEESSPSPPHRRSRPQGAEAIKRRIQA
VRESHSFIEDYQCDTEESLWCQVTVKLPLMKINFDMSSLVVSLARNAIVYTTKGITRCLL
NETTNSKNEKELVLNTEGINLPELFKYSEVLDLRRLYSNDIHAMANTYGIEAALRVIEKE
IKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRIGIQSSSSPLQQMTFEASYQFLKQA
TMMGSHDELKSPSACLVVGKVVKGGTGLFELKQPLR
NT seq
5151 nt
NT seq
+upstream
nt +downstream
nt
atgctggcctccaagcacacgccatggaggcggcttcagggcatttccttcgggatgtat
tcggccgaggagctcaagaagttaagtgttaaatccattacaaatcctcgctatgtggac
aacctgggaaacccttcagcaaatggcctgtatgatttggctttgggtcctgcagattcc
aaagaagtatgttctacctgcgtgcaggacttcaacaactgctctggacacctgggccac
attgatctcccgctcacagtctacaaccctctcctcttcgataaactctacctgctgctt
cgaggttcctgtttaaattgccacatgctgacttgtcctcgggctgtcattcacctgttg
atctgccagctgagggtcctggaagttggagccctacaagcagtctatgagcttgagcga
attctcagcaggtttctggaagaaactgtagatccttcctccttcgaaattcaagaagag
ttagaagagtacacaagcaaaattctgcagaacaacttcttggggtcccagggcgcacat
gtgaaaaatgtgtgcgagagcagaagcagacttgtcgctcacttctggaagacacacatg
actgcgaagcactgcccacactgcaagacggggcggtcagtggttcggaaggagcacaac
agtaagctgataatcacatacccagccgcggtgggcaagaagtcagaccagaaggacgca
gaactcccagaaggcataccagcagctccaggaattgacgaggctcagatggggaaacga
gggtacctgaccccgagcagtgcccaagaacaccttttcgccatttggaagaatgaagga
ttctttctgaattctcttttctcgggattggatgatcttagcatggagtccagtttcaac
cccagtatgttctttctagacttcatagtggtaccaccatccaggtaccgtcccatcaat
cgcctgggcgaccagatgttcactaatggccagacagtaaacttgcaagctgtcatgaag
gatgcagttttgatccggaaacttctggcattgatggcccaagaacagaaactgccctgt
gagatgacaaaactcaccatagacaaggaaaatgactcctcagtggctattgaccgatcc
ttcctaagtttgcttccaggccagtctctcacagataaactttacaacatttggattcgt
cttcagagccatgtcaatattgtgtttgacagtgacatggacaaattgatgttggaaaag
taccctggcataagacagattctagagaagaaggaaggcctgttccggaagcacatgatg
ggaaagcgagttgactacgcagcccgctctgtcatctgcccagatatgtacatcaacacc
aatgagattggaatccccttggtatttgccacaaaactgacttaccctcagccagttacc
ccctggaacgtgcaggaactgagacaggcagtcatcaatggacccaatgtgcacccagga
gcctctatggtcatcaacgaggatggcagtcgcacagccctgagtgcagtggatgctgcg
cagcgggaagctgtggccaaacagctcctgacaccagccacaggggctcctaagcctcag
ggaacaaaagttgtgtgccggcatgtgaagaatggggacatcctcctcctgaaccgacag
cccaccttgcacagaccctccatccaggcccaccgtgcccacattctgcctgaagaaaaa
gttctacgccttcactatgccaactgcaaggcctacaatgctgactttgatggagatgag
atgaacgcccacttcccccagagcgagctgggccgagctgaagcctatgtcctggcctgc
actgatcaacagtatcttgtccccaaggatggccagccattggcaggactgatccaagat
cacatggtttcaggtgcaaacatgaccattcggggatgctttttcacccgggaacagtac
atggaactggtgtaccgagggctcacagacaaagtgggacgtgtgaagctctttcctccc
gccatcctgaagcccttcccgctgtggacaggaaagcaggttgtgtcgaccctcctcata
aacataattccagaggactacacccctctgaacttatctggaaaggcaaaaatcggcagc
aaagcctggatgaaggaaaagccacggcctatccctgactttgaccctgactccatgtgt
gagtcccaggtgatcatcagggaaggagagctgctctgcggagtgctggacaaggcacac
tatgggagctctgcctacggcctggtgcactgctgctatgagatctatgggggtgagacc
agcggcagggttctcacctgcctagcccgcctcttcactgcctacctacagctctataga
ggtttcaccttgggtgtagaagacattttggttaaaccaaatgcagatgtgatgagacag
cacatcattgaagaatctacccagtgtggaccccgggctgtcaaggctgcattgaacctg
ccagaagctgcatcatgtgatgaaatccaagggaaatggcaggatgcccatctgggcaaa
gaccagagggattttaacatgattgatatgaagttcaaggaggaagtgaaccattacagc
aatgagattaacaaggcatgtatgcctttaggcttgcacagacagttccccgagaacaac
ctgcagatgatggtgcagtcgggagccaaagggtcaaccgtgaacacgatgcaaatctct
tgcctgctgggccaaattgaattggaaggtcggagacccccactgatggcgtctggcaag
tcactgccctgctttgagccttacgagttcacccccagggctggtggctttgtcactgga
aggttccttaccggtatcaggcctcctgagttcttcttccactgcatggcaggacgagag
ggcctggtggacactgctgtcaaaaccagccgttctggctatctccaaagatgtatcatc
aagcacctggaggggctggtcatccagtacgatctgacggtccgtgacagcgatggcagt
gtggtacagttcctgtatggggaggacggcctggacatccccaagacacagttcctacag
cccaagcagttcccctttctggccagcaattatgaggtgataatgaaatccaagcatctt
catgaagttttatccagagcagatccccagaaagtgctccgccacttcaaagccattaaa
aaatggcatcacaagcattccagtgccctgctgagaaaaggcgccttcctcagtttttcc
cagaagattcaggcagctgtgaaagccttgaacctaaagggcaagacccagaatggccgc
agcccagagacccagcagatgttacagatgtggtatgaattggatgagcagagccgatgg
aaataccagaagagggctgccccttgtcccgaccctagcctttctgtatggcgcccagac
atctactttgcatctgtgtctgaaacatttgaaaagaagattgatgactacagtcaggaa
tgggcggctcaagcagagaagagttacaaaaaatcagagctttccctcgacaggctgaga
accttactgcagctgaagtggcagcgctcactgtgtgacccaggcgaggctgttggcctc
ctggctgcccaaagcatcggagaaccctccacacagatgacactgaacaccttccacttt
gcaggcagaggcgagatgaacgtcaccctgggcattccaagattgagggagattctcatg
gtggccagtgccaacatcaaaacacccatgatgagcgtgcctgtgttcgacaccaagaaa
gcactgaagaaagtgaagagtctaaagaagcggctcactagagtgtgcctgggggaggta
ttgcagaaagtggacatccaggagtccttcagtatgggaaaaaaacagagtaaattccgg
gtgtatgcgctccggtttcagttcctgccacatgcgtattaccagcaagagaagtgcctg
agacccgaggacatcttgcacttcatggaaaccagattctttaagctactaatggaagct
atcaaaaagaagaatagcaaagcatcggccttcagaagtgtgaatactaggagagctaca
cagaaggacctcaatgacactgaggactcagggaggaatcagagagaggaggaaaaggat
gaggaagaggaggggaacattgtggatgctgaagctgaggaaggtgatgcagacgcttct
gacaccagacgcaaggagaagcaagaagaagaggttgactatgagagtgaggaagaagga
gaggaggaagaggaggaggatgtacaagaagaagggaacatcaaaggggaaggtgtccac
cagggccatgagccagatgaggaagactatataggcctcgaggaggagtcatccccgagc
cctccccaccgccgctccaggcctcagggagctgaggccataaaacgccggatccaggct
gtacgggagtcccactcgttcatcgaggactaccagtgtgacacagaggaaagcctgtgg
tgccaggtgactgtgaagctcccattgatgaagattaattttgacatgagctccttggtt
gtgtccttggcccgcaatgccattgtctatacaaccaagggcatcactcggtgcctcctg
aatgaaacgaccaacagcaagaatgagaaggagcttgtgctgaacacggagggaatcaac
ctccctgagctgttcaagtactccgaggtactggacctgcgccgcctctactccaacgac
atccacgccatggccaatacttatggcatcgaggctgcgctgcgggtgatagagaaggag
attaaagatgtgtttgctgtatatggcattgccgttgatcctcgacatctctccctggtg
gctgattacatgtgttttgagggtgtttataagcctctcaatcgcattgggatccagtca
agctcctcccctttgcagcagatgacatttgaagccagctaccagtttctgaaacaggcc
accatgatgggatcccatgatgaactgaagtcaccttctgcctgcctcgtggtgggaaag
gtcgtcaaaggcgggacaggcctgtttgagctcaagcaacccctaagatag
DBGET
integrated database retrieval system
