KEGG   Mus pahari (shrew mouse): 110315960
Entry
110315960         CDS       T05929                                 
Symbol
Ybx3
Name
(RefSeq) Y-box-binding protein 3 isoform X1
  KO
K06099  cold shock domain protein A
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah04530  Tight junction
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04530 Tight junction
    110315960 (Ybx3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mpah03000]
    110315960 (Ybx3)
   03041 Spliceosome [BR:mpah03041]
    110315960 (Ybx3)
Transcription factors [BR:mpah03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   Cold-shock domain factors, DbpA-like
    110315960 (Ybx3)
Spliceosome [BR:mpah03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA binding proteins (RBPs)
    110315960 (Ybx3)
SSDB
Motif
Pfam: CSD OB_RNB
Other DBs
NCBI-GeneID: 110315960
NCBI-ProteinID: XP_021045634
Ensembl: MGP_PahariEiJ_G0022709
LinkDB
Position
2:complement(146419347..146442602)
AA seq 361 aa
MSEAGEATTGGTTLPQAAADAPAAAPPDPAPKSPAASGAPQAPAPAALLAGSPGGDAAPG
PAPASSAPAGGEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP
PRNYAGEEEEEGSGSSEGFEPPAADGQFSGARNQLRRPQYRPPYRQRRFPPYHVGQTFDR
RSRVFPHPNRMQAGEIGEMKDGVPEGAQLQVHRNPTYRPRFRRGPARPRPAPAIGEAEDK
ENQQAANGPNQPSARRGFRRPYNYRRRSRPLNAVSQDGKETKAGEAPTENPAPATEQSSA
E
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgagcgaggcgggcgaggccaccaccggcggcaccacgctcccgcaggccgcggccgac
gcgcccgccgcggcgcccccggaccccgcgcctaagagcccggcggccagcggcgcgccc
caggccccagcgcccgccgcgctgctcgcggggagccccggcggagacgcagcccccggg
cccgccccggcctcatcagcccccgcgggcggcgaggacgcggagaagaaagttctcgcc
accaaagtccttggcactgtcaaatggttcaacgtcagaaatggatatggatttataaat
cgaaatgacaccaaagaagatgtgtttgtacaccagactgccatcaagaaaaataatcca
cgcaagtatctgcgcagtgtgggggatggagaaactgtagagtttgatgtagttgaagga
gaaaagggtgctgaagcagcaaatgtgactggcccagatggagttcctgtagaaggtagt
cgctatgctgctgaccggcgccgatacagacgcggctactatggcaggcgccgtggacct
ccccgtaattacgctggggaggaggaggaggaagggagcggcagcagtgaaggatttgag
ccccctgccgcagatgggcagttctctggggccaggaatcagctgcgccgcccccagtat
cgccctccataccggcagcggcgtttcccgccttaccacgtgggacagacctttgaccgt
cgctcacgggtctttccccatcccaacagaatgcaggctggtgagattggagagatgaag
gatggagtccccgagggagcacagctccaggttcatcggaatccgacttaccgcccaagg
ttccgcaggggacctgctcgcccacgacctgcccctgctattggagaggctgaagataaa
gaaaaccagcaagcggctaatggcccaaaccagccgtctgcccgccgtggattccgacgc
ccctacaactataggcgccgttcccgtcccctcaacgctgtttcacaagatggcaaagag
accaaggcaggtgaagcaccgactgagaaccccgctccagccaccgaacagagcagtgcc
gagtga

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