Mus pahari (shrew mouse): 110316034
Help
Entry
110316034 CDS
T05929
Symbol
Sox5
Name
(RefSeq) transcription factor SOX-5 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mpah03000
]
110316034 (Sox5)
Transcription factors [BR:
mpah03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
110316034 (Sox5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
MPS2
Motif
Other DBs
NCBI-GeneID:
110316034
NCBI-ProteinID:
XP_021045777
Ensembl:
MGP_PahariEiJ_G0022803
LinkDB
All DBs
Position
2:complement(158395746..159339337)
Genome browser
AA seq
763 aa
AA seq
DB search
MLTDPDLPQEFERMSSKRPASPYGETDGEVAMVTGREKVEEEESERLPAFHLPVHVSFPN
KPHSEEFQPVSLLMQETCGPRTPTVQHNTMEVDGNKVMSSLAPYNSSTSPQKAEEGGRQS
GESVSSAALGTPERRKGSLADVVDTLKQRKMEELIKNEPEDTPSIEKLLSKDWKDKLLAM
GSGNFGEIKGTPESLAEKERQLMGMINQLTSLREQLLAAHDEQKKLAASQIEKQRQQMEL
AKQQQEQIARQQQQLLQQQHKINLLQQQIQVQGQLPPLMIPVFPPDQRTLAAAAQQGFLL
PPGFSYKAGCSDPYPVQLIPTTMAAAAAATPGLGPLQLQQFYAAQLAAMQVSPGGKLLGL
PQGNLGAAVSPTSIHTDKSTNSPPPKNKDEVAQPLNLSAKPKTSDGKSPASPTSPHMPAL
RINSGAGPLKASVPAALASPSTRVSTIGYLNDHDAVTKAIQEARQMKEQLRREQQALDGK
VAVVNSIGLSNCRTEKEKTTLESLTQQLAVKQNEEGKFSHGMMDFNMSGDSDGSAGVSES
RIYRESRGRGSNEPHIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMTNL
EKQPYYEEQARLSKQHLERYPDYKYKPRPKRTCLVDGKKLRIGEYKAIMRNRRQEMRQYF
NVGQQAQIPIATAGVVYPGAIAMAGMPSPHLPSEHSSVSSSPEPGMPVIQSTYGVKGEEP
HIKEEIQPEDINGEIYEEYDEEEEDPDVDYGSDSENHIAGQAN
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgcttactgaccctgatttacctcaggagtttgaaaggatgtcttccaagcgaccagcc
tctccgtatggggagacagatggagaggtagccatggtgacaggcagagagaaagtggaa
gaggaggagagtgagaggctcccagcctttcaccttcccgtacatgtgagttttcccaac
aagcctcactcggaggaatttcagccagtttctctgctgatgcaagagacttgtggtcct
aggacccccactgtgcagcacaacacaatggaagtcgatggcaataaagttatgtcttca
ttagctccatacaactcatctacctcacctcagaaggcggaagaaggtgggcgacagagt
ggcgagtccgtgtcgagcgcagccctggggactcccgagcggcgcaagggcagcttagca
gacgtggtggacaccctgaagcagaggaagatggaagagctgatcaagaatgagccagaa
gacactcccagtattgaaaagctactctccaaggactggaaagacaagctcctggcaatg
ggatcagggaactttggagaaataaaagggactcctgagagcctcgctgagaaggagcgg
cagctcatgggtatgatcaatcagctgaccagcctgcgagagcaactcctggctgcccac
gatgagcagaagaagttggctgcatctcagatagagaaacagcgtcagcagatggagctg
gccaagcagcaacaagagcagatcgcgaggcagcagcagcagcttctgcagcaacaacac
aaaatcaacttgcttcagcagcagatccaggttcaaggtcagctgccgccattgatgatt
cccgtgttccctcctgaccagcgaaccctcgcagcagctgcccagcaaggattcctcctt
cctcctggtttcagctacaaggctgggtgcagtgacccttaccctgttcagctgatccca
accaccatggcagctgccgctgcagcgacaccaggcttaggcccactccagctgcagcag
ttctatgctgcccagctagccgcaatgcaggtttctccaggagggaagctcctaggccta
ccccaaggcaaccttggtgctgccgtgtctcctaccagcattcacacagacaagagcaca
aacagcccaccacccaaaaataaggatgaagtggcccagccactgaacctatcagctaag
cccaagacctctgatggcaaatcacctgcatcacccacctctcctcacatgccagctctg
agaataaacagtggggcgggccccctcaaagcctcggtcccggcagcgttagctagtcct
tccacgagagttagcacaataggctatttaaatgaccacgatgctgtcaccaaggcaatc
caagaagctcgccagatgaaggagcaactcaggcgagagcagcaagcattggacgggaag
gtggccgtggtgaacagcataggtctcagcaactgccggacagaaaaggaaaaaacaaca
ctggagagcctgactcagcagttggcagttaaacagaatgaagaagggaaatttagccat
ggaatgatggatttcaatatgagtggagattctgacggaagcgctggagtctcggagtca
agaatttacagggaatccaggggacgtggtagcaacgagccccacataaagcgtccaatg
aatgccttcatggtgtgggcgaaagatgaacggaggaagatccttcaggcctttcccgac
atgcacaattccaacatcagcaagatactgggatctcgctggaaagctatgaccaaccta
gagaaacagccatactatgaggagcaggcccgcctcagcaaacaacacctggagaggtac
ccggactacaagtacaagcctagaccaaagcgcacctgcctagtggacggcaagaagctg
cgcatcggcgagtacaaggccatcatgcggaaccggaggcaggaaatgcgacagtacttc
aacgttgggcaacaagcacagatccccatcgcgacggccggcgttgtgtaccccggtgcc
attgccatggccggaatgccgtccccacacctgccctccgagcactcgagcgtgtccagc
agcccggagcccgggatgcccgtgattcagagcacttacggcgtgaagggagaggagcct
cacatcaaggaggagatccagcctgaggacatcaacggagagatttacgaggagtacgat
gaggaggaggaggacccggatgtggattatgggagtgacagcgaaaaccacattgcggga
caagccaactga
DBGET
integrated database retrieval system
