Mus pahari (shrew mouse): 110317564
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Entry
110317564 CDS
T05929
Symbol
Prpf40a
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110317564 (Prpf40a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mpah03041
]
110317564 (Prpf40a)
Spliceosome [BR:
mpah03041
]
Complex A
U1 snRNP components
U1 related factors
110317564 (Prpf40a)
Complex B
110317564 (Prpf40a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
110317564
NCBI-ProteinID:
XP_021047708
Ensembl:
MGP_PahariEiJ_G0025012
LinkDB
All DBs
Position
3:complement(39814498..39867877)
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AA seq
968 aa
AA seq
DB search
MCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESQPPSRGPGDGERRLSGSNLCSSSWVS
ADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMPGMMS
SVMSGMMMSHMSQASMQPALPPGVNSMDVAAGAASGAKSMWTEHKSPDGRTYYYNTETKQ
STWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGYQNTI
VAGGLITKSNLHAMIKAEESSKQEECTTASTAPVPTTEIPTTMSTMAAAEAAAAVVAAAA
AAAAAANANTSTTPTNTVGSVPVAPEPEVTSIVGTAVDNENTVTVSTEEQAQLANTTAMQ
DLSGDLASNTGEEPAKQETVSDFTPKKEEEESQPAKKTYTWNTKEEAKQAFKELLKEKRV
PSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQR
FLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKR
NWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALE
KEEEEEKQKTLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNM
LGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRS
TTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWED
IRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKKSKKHHRKRSRSR
SGSDSDDDDSHSKKKRQRSESHSASEHSSTAESERSYKKSKKHKKKSKKRRHKSDSPESD
TEREKDKKEKDRESEKDRSRQRSESKHKSPKKKTGKDSGNWDTSGSELSEGELEKRRRTL
LEQLDDDQ
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagcggcagtggccgccgacggagcagtctgagcccgacgatgaggccggggact
ggagccgagcgtggaggcctcatggtgagtgaaatggagagccaacctccctcgcggggt
cccggggacggggagcggagattgtccggctcaaacctgtgctccagttcttgggtctct
gctgacggcttcctgaggagacggccctcgatggggcatcctggcatgcattatgcacca
atgggcatgcaccctatgggtcagagagcaaacatgcctcctgtacctcatggaatgatg
ccacagatgatgccccctatgggagggcctccaatgggacaaatgcctggaatgatgtct
tcagtaatgtcaggaatgatgatgtctcatatgtctcaggcttccatgcaacctgcctta
ccgcctggagttaatagtatggatgtagcagcaggtgcagcatctggtgcaaaatcaatg
tggacagaacataaatcacctgatggaaggacttattattacaatactgaaacaaaacag
tctacctgggaaaagccagatgatcttaaaacacctgctgagcaactgttgtctaaatgc
ccatggaaagagtacaaatctgattccgggaagccttattactataattctcaaacaaag
gagtcccgctgggccaaacctaaggaacttgaagatcttgaaggataccagaataccatt
gttgctggaggtcttattacaaaatcaaacctgcatgccatgatcaaagctgaagaaagc
agcaagcaagaagaatgtactacagcatcaacagccccagttcctacaacagaaattcct
accacgatgagcaccatggctgctgcagaagcagcggctgctgttgttgcagctgcggcg
gctgctgcagcagcagctaatgccaatacttccaccacccctactaatactgtaggaagt
gttccagttgctcctgaacctgaagttacttccattgttggtactgctgtagataatgaa
aatacagtaactgtatcaactgaagagcaagcacagcttgctaataccacagctatgcaa
gatctcagcggtgatctagccagtaacactggagaggaaccagctaaacaggaaactgtc
tctgattttactcctaaaaaagaagaggaagagagccaacccgcaaaaaaaacatatact
tggaatacaaaggaggaggcaaagcaagcatttaaagaattattgaaagaaaagcgggta
ccctccaatgcttcttgggagcaagctatgaagatgatcataaatgatcctcggtacagt
gctttagcaaagctgagtgagaaaaagcaggcctttaatgcctataaagtccagacggag
aaagaggaaaaagaagaagcaagatcaaaatacaaagaagctaaggaatcttttcagcgt
tttcttgaaaatcatgaaaaaatgacttccacaaccagatacaaaaaagctgagcaaatg
tttggggagatggaagtttggaatgcaatatcagagcgtgatcgtcttgaaatctatgaa
gatgttttgttcttcctttcaaagaaagaaaaggaacaagcaaagcagttacgaaagaga
aattgggaagccttaaaaaacatacttgacaatatggcaaacgttacatactctaccact
tggtctgaagcccagcaatatctgatggataatccaacgttcgcagaggatgaagagtta
cagaacatggataaagaagatgcattaatatgctttgaggaacacatccgggctttagaa
aaggaagaagaagaagaaaaacagaagactttgttgagagagaggaggaggcagcgtaaa
aatagggaatcttttcagatctttctagacgagttgcacgagcatgggcagctgcactct
atgtcctcttggatggagctgtatccaaccatcagctcggacattcggttcactaacatg
ctgggtcagccgggatcaactgcacttgatcttttcaagttttatgttgaagatcttaaa
gcacgatatcatgatgaaaagaagataataaaagacattctgaaggataaaggatttgta
gttgaagtaaacactacttttgaagattttgtggcaataatcagttcaaccaaaagatca
actactttggatgctggaaatatcaagttggctttcaatagtttactagaaaaggcagaa
gcccgtgaacgtgagagagaaaaagaagaggctcggaaaatgaaacggaaagagtctgcc
tttaagagtatgttgaaacaggctacccctccaatagaactggatgctgtctgggaagat
atccgggaacgatttgtaaaggaaccagcgtttgaggatataactctagaatctgaaaga
aaaagaatatttaaagatttcatgcatgtgcttgagcatgaatgtcagcatcatcattca
aagaacaagaaacattctaagaaatctaaaaaacaccataggaaacgctcccgctctcga
tcgggatcagattcagatgatgatgacagccattcaaagaaaaaaaggcagcgatcagaa
tctcattctgcttcagaacattcttctactgctgagtctgagagaagttacaagaaatca
aaaaagcataagaagaaaagcaaaaagaggagacataaatctgactctccagaatcagat
actgaacgagagaaggataaaaaagaaaaagatcgggaaagtgaaaaagacagaagtaga
cagagatcagaatccaaacacaaatcacctaagaaaaagactggaaaggattctggtaac
tgggatacttctggcagtgaactgagtgaaggggaattggaaaagcgcagaagaacactt
ttggagcaactggatgatgatcaataa
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