Mus pahari (shrew mouse): 110317844
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Entry
110317844 CDS
T05929
Symbol
Vps18
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah04140
Autophagy - animal
mpah04148
Efferocytosis
mpah05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110317844 (Vps18)
04148 Efferocytosis
110317844 (Vps18)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
110317844 (Vps18)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mpah04131
]
110317844 (Vps18)
Membrane trafficking [BR:
mpah04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
110317844 (Vps18)
Hops complex
110317844 (Vps18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_5
Vps39_2
zf-RING_16
zf-C3HC4_2
KNOX2
zf-RING_2
zf-ANAPC11
zf-RING_UBOX
zf-rbx1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
110317844
NCBI-ProteinID:
XP_021048328
Ensembl:
MGP_PahariEiJ_G0025584
LinkDB
All DBs
Position
3:102713062..102727035
Genome browser
AA seq
973 aa
AA seq
DB search
MASILDEYEDSLSRSAVLQTGCPSVGIPHSGYVSAHLEKEVPIFTKQRIDFTPSERITSL
VVSCNQLCMSLGKDTLLRIDLGKASEPNRVELGRKDDAKVHKMFLDHTGSHLLVALSSTE
VLYMNRNGQKARPLARWKGQLVESVGWNRALGSESSTGPILVGTAQGQIFEAELSASEGG
LFGPAPDLYFRPLYVLNEEGGPAPVCSLEAERGPDGRGFVIATTRQRLFQFIGRAVEDAE
AQGFSGLFAAYTDHPPPFREFPSNLGYSELAFYTPKLRSAPRAFAWMMGDGVLYGSLDCG
RPDSLLSEERVWEYPAGVGPGANPPLAIVLTQFHFLLLLADRVEAVCTLTGQVVLRDHFL
EKFGPLRHMVKDSSTGHLWAYTERAVFRYHVQREARDVWRTYLDMNRFDLAKEYCRERPD
CLDTVLAREADFCFRQHRYLESARCYALTQSYFEEIALKFLEARQEEALAEFLQRKLAGL
KPTERTQATLLTTWLTELYLSRLGALQGDPDALSLYRDTRECFRTFLSSPRHKEWLFASR
ASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAVLARHRDPQLFYKFSP
ILIRHIPRQLVDAWIEMGSRLDARQLIPALVNYSQGGEAQQVSQAIRYMEFCVNVLGETE
QAIHNYLLSLYARGQPASLLAYLEQAGASPHRVHYDLKYALRLCAEHGHHRACVHVYKVL
ELYEEAVDLALQVDVDLAKQCADLPEEDEELRKKLWLKIARHVVQEEEDVQTAMACLASC
PLLKIEDVLPFFPDFVTIDHFKEAICSSLKAYNHHIQELQREMEEATASAQRIRRDLQEL
RGRYGTVEPQDKCSTCDFPLLNRPFYLFLCGHMFHADCLLQAVRPGLPAYKQARLEELQR
KLGAVPPPTKGSVKAKEAEAGAAAVGPSREQLKADLDELVAAECVYCGELMIRSIDRPFI
DPQHYEEEHLSWL
NT seq
2922 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccatcctggatgagtacgaggactcattgtcccgctcggccgtcttgcagacc
ggttgccccagcgtgggcatcccccattctgggtacgtaagtgcccacctggagaaggag
gtgcctatcttcaccaagcagcggattgacttcaccccctcggagcggatcactagcctc
gttgtctcctgcaatcagctctgcatgagcctagggaaggacacactgctccgcattgac
ttgggcaaggcaagtgagcccaaccgtgtggaactgggacgcaaggatgatgccaaagtc
cacaagatgttcctggaccatactggctctcatctgctggttgcgctgagtagcaccgag
gtcctttacatgaaccgcaatggacagaaggcccggcccctggctcgctggaagggacag
ctggtggagagtgtgggttggaacagagccctgggcagcgagagcagcaccggccccatc
ctggtcggcacagctcaaggacagatctttgaagcagagctctcagctagtgaaggcggc
ctctttggccctgccccggatctctacttccgcccactgtatgtgttaaatgaagaaggg
ggtccagcccctgtatgctcccttgaggctgagcgtggccccgatggccgaggctttgtc
attgccaccactcggcagcgtctcttccagttcataggccgagcagtggaagatgctgaa
gcccagggcttctcggggctctttgctgcctatacagaccacccacccccattccgtgag
tttcctagcaacttggggtatagtgagttggctttctatacccctaagttacgctctgca
cctcgcgcctttgcctggatgatgggagatggtgtgctgtatggctcactggactgcggg
cgtcctgactcgctgctgagtgaggagcgagtgtgggaatacccggcaggggtcggtcct
ggggccaatccacccttagccattgtcctgacccagttccatttcctgctgctgctggca
gaccgggtggaggctgtgtgcacactaacagggcaggtggtgctacgggatcacttcctg
gagaagtttggaccactgaggcacatggtgaaggactcgtccacaggtcacctctgggcc
tacactgagcgcgcggtcttccgctaccatgtgcagcgtgaggctcgggatgtctggcgc
acctacctggacatgaaccgctttgacctggccaaagagtattgtcgggagcggcctgat
tgcctggacacggtcctggcccgagaggctgatttctgctttcgccagcaccgctacctg
gagagcgcccgctgctatgctctgacccagagctattttgaggagattgccctcaagttc
ttggaggcccggcaagaggaggcgctggccgagtttctgcagcggaaactggccggcttg
aagccgacggagcgtacccaggccacactgctgaccacttggctgacagagctctacctg
agccggctcggtgctctgcagggtgacccggatgctttgagtctctaccgggacacacgg
gagtgcttccgtacctttctcagtagccctcggcacaaagagtggctctttgccagccgg
gcctctatccacgagctgctcgccagtcatggagacacagagcacatggtgtattttgca
gtgatcatgcaggactatgaacgggtggtcgcataccactgccagcatgaggcctacgag
gaggccttggctgtgcttgcccgccaccgtgacccccagctcttctacaaattctccccc
atcctcatccgccacatcccccgccagctcgtagacgcctggattgagatgggcagccgg
ctggatgctcggcagcttatccctgccctggtgaactacagccagggtggtgaggcccag
caggtgagccaggccatccgctatatggaattctgcgtgaatgtgctcggtgagaccgag
caggccattcacaactacctgctgtcactgtatgcccgtggccagccggcttcacttctg
gcctacctggaacaagctggggccagcccgcaccgtgtacattatgatctcaaatatgca
cttcgactttgtgctgagcacggccaccaccgtgcctgcgtccacgtctataaggtgctg
gagctgtatgaggaggctgtggacctggccctgcaggtggatgtggacctggccaagcag
tgtgcagacttgccggaggaggatgaggaacttcgcaagaaactatggctcaagattgcc
cggcatgtggtacaggaggaggaagacgtccagacagccatggcctgcttagccagctgc
cccttgctcaagatcgaggatgtgctgcccttcttccctgactttgtcacaatcgaccac
ttcaaggaggcaatctgtagttcccttaaggcctacaaccaccacatccaggagctgcag
cgcgagatggaagaagccacagccagtgcccagcgcatccgacgagacttgcaggagctc
cgagggcgctatggcactgtggagccccaggacaagtgctccacctgtgactttcctttg
ctcaaccgacccttttacttgtttctctgtggccacatgtttcacgctgactgtctcctg
caggctgtgcggcccggccttcctgcctacaagcaggccagactcgaggaactgcaacgc
aagcttggggctgtgcctcctccgaccaaaggctccgtgaaggccaaggaagccgaagct
ggggctgcagcggtggggcccagccgggaacagctcaaggctgacctagatgagctagtg
gctgctgagtgtgtatactgtggggagctgatgattcgctctattgaccggcccttcatt
gatccgcagcactatgaagaggagcatcttagctggctatag
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integrated database retrieval system
