Mus pahari (shrew mouse): 110317998
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Entry
110317998 CDS
T05929
Symbol
Spg11
Name
(RefSeq) spatacsin
KO
K19026
spatacsin
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah05014
Amyotrophic lateral sclerosis
mpah05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
110317998 (Spg11)
05022 Pathways of neurodegeneration - multiple diseases
110317998 (Spg11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mpah03400
]
110317998 (Spg11)
DNA repair and recombination proteins [BR:
mpah03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
110317998 (Spg11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
110317998
NCBI-ProteinID:
XP_021048434
Ensembl:
MGP_PahariEiJ_G0025647
LinkDB
All DBs
Position
3:complement(105505608..105569770)
Genome browser
AA seq
2399 aa
AA seq
DB search
MAAQPGPGSAASPGSAGAMERVLPMLLVRIPAEETAQLGPRAQLHRELEALGSLTAAGSL
QVLSLAPGSRGGSSCCLRGPFRQFLWEESQNSTSRDKPKLLVAREDYELLVYEFDLRDGR
CVAALLHGCCGRTLQKLTEEQGVSISFKSLRILSFHNNTSLLLINRCLIVHVVFPGREPG
VPVLDCLSLPLPVQAADTIIDAQLCKRFLFVLSTAGWIYIFNTMDGMHVARVDLALLRED
SEQLEPASISSFTSLKVSQDLDVLVLVSSSNTAVALNLHLYFRQHPGHLLCEGILEDLPI
EGPPGVDEDDPVNSVHSMKLSKVSFQVDRSWRAQLSSLNASVRGSEPEVSCFAPWYQGAL
RLESLESGHHTPTVPSHVFIPGDVPRGRCAFPQKEHIKSSDPERPWKTMHLSEREQPTEL
TCLSVTGFTALFTWAVGTTSCTIGLWDLETQSMQCFSLSQKCIPVDISGAQQLCLALTDD
GLSLILFGLTQEEFLNRLMIHGSASTVDSLCHLNGWERCSIPIHALEAGIENRQLDTVDF
FLKSKENLLTPSSQFPAPDQQYPFSSHLYLRQVEEMSPALDLLCSAIRESDSETQSKHFA
EQLLHLTLSFLNKQIRELFVHTEELDEHLQKGVAILTSYINELRTFMIKFPWKPGDAIDE
SDVNEGVVTVKEDQVWEELSFEEVIADAILNNRIPEAQTFFRITGHSAQRLEELVRIGLD
LAFDSLKKNNVEEASRLLRNMGFSVEDELLKICFYTTDKNIRDFLVEILKEKKCFSAKER
RTVDFVHQLETLYSGHFQENAQMQVFPRYWIKDQDCFKHKSVLDTFLKYDKKDEFHKQDH
RIALNWAHWWDLQTQECILLPRISPKEYKACSPEALWRHLTAHHDWSSISLWMEEFQTQE
IESPQQSKWPPLSADIIEQGTCCHSHMRNEILDKLARSGIFLASELEDFELLLLRLSRIG
GVMQDSLPVQRYKSSAGCDFHSRFILYCLEHGLQHLLYVYLDYYKLSPGNCPFLEKKELH
EAHPWLEFLVQCRQVSSNLTEMATVLSRRASEELSGKLQVIQNEDSENCLKKVDPQLLKV
ALTPYPKLKAALFPQYTAPSMLPSDITLYHLIQSLPPFDPSRLFGWQSANTLAIGDTGSQ
LPHFSSPDLVSKYAVLERLNYAYYLHHGRPSFAFGTFLVQELIKSKTPKQLIQQVGKEAY
TLGLSSFNNPSVGAACVCFLELLGLSSLKLRVDLKMANVILGSKRKDEDAHSSFIRESLA
EKLSKLADGDTATTEELLVLLEEGVWDSIEQQGFNRLSSESSSQWALVLQFCMLHDRKLS
VSYLRECAKANDWLQFLVHSQLYNYHPAEVESLLQYFSPVLQSHLKLASEKLSSGSISRD
DSCLQELQKNKGETSDFFEILHRCSDESASWSWLLAEAVKHRVPILSVLASCIQGASIVP
CLCVWIVTSVEDKVAVEAVGHIQISVENHHWSLEDLSIIWRTVLTRRKSHTLTQGFQLFI
KDSPLLLIMEMYELCMFFKNYEKAKVKLLEFQKSLETLDTAASRVLPIIPASWIKDQVCF
LLKLMPQQCETQYELGKLLQLFVGTEKLFSDGPDVQKLCLLSQVLKDTPIAISPAVISSY
STENFQRECRSILEKLKADGQFAVARRVAELAALPVDSLLIEQLTQEMQTLTHTPQWSLK
QERLDFWKKCHENFKKNSISKRAASSFFSSQAPEVSEHPAEQSSLEERHLLLTLAGHWLA
QEEPVPVEELEELEKQIWICRIAQHTWGGPGEAKPSLSQRRLAAAELSFDSLASELSFSK
LAALNTSKYLDLNDLPSKTTCENRLEHKEQESLNTLIGQLLDGGCVHEASRVCQYFRFYS
QDLVLVLHCRALASVEANMEDLHSEIRALLSSAAQPEDLESPSVPLRKIHSSSSLDSQSL
VMVPPTDEVARNLHTLISKCLHGKNYCRQVLCLYELAKDLGCSYGDVAARDSEAMLRAIL
ASQRPDRCRQAQVFINTQGLEPDTVAELVAEEVTRELLTPSEGTGEKQPFNPAEESQTFL
QLTALCQDRTLVGMKLLDKIPSVPHGELSCTTELLILAHHCFTFTCHMEGIIRVLQAARM
LTENHLAPSEEYGLVVRLLTGIGRYNEMTYIFDLLHQKHYFEVLMRKKLDPTGTLKTALL
DYIKRCRPGDSEKHNMIALCFSMCREIGENHEAAACIQLKLIESQPWEESLKDGAQLKQL
LLKALTLMLDAAESYAKDSCVRQALHCNRLTKLITLQIHFLNSGQNTMLINLGHQKLMDC
IMTLPRFYQASIVAEAYDFVPDWAEVLYQQVIVKGDFSYLEEFKQQKLLRPNIFEDISKK
YKQHQPTDRVTENLKKLLSYCEDIYLYYKLAYEHKFFEIVNMLLKDPQTGCCLKDMLAG
NT seq
7200 nt
NT seq
+upstream
nt +downstream
nt
atggctgcccagccagggcccggaagtgctgcctccccgggcagcgccggggccatggag
cgggtcctacccatgctgctggtgcggatccctgccgaggagacggcgcagctgggaccg
cgggcgcagctgcaccgagagctggaggccctggggagcctcacggctgcgggcagtctc
caagtgctttccttggcgccgggcagccggggtggaagcagctgctgcctccgaggcccc
tttaggcagttcctatgggaggagtcacagaacagcacatcaagagacaagcccaaactg
cttgttgccagagaagattatgagctgctcgtgtatgagtttgacttgagagatggaaga
tgtgtcgcagccttactacacggctgttgtgggaggacactgcagaagcttactgaagag
caaggtgtcagtatttccttcaagtctctgagaattctgtcatttcacaacaacacgtca
ttactgctcatcaacagatgtctcatcgtacacgttgtgtttccggggagagaacccggg
gtcccagtgctggactgcctctcactgcccctgcctgtacaggcagcagacacgatcatt
gatgcgcagctctgcaagagatttctttttgttctgagcacagcgggctggatctatatt
tttaacactatggatggcatgcatgtagcgcgagtggacttggctcttctcagagaagat
tctgagcaactggagccagccagcatctcgtccttcacatccctgaaagtgtctcaggac
ttagatgttttggtgcttgtcagctcatccaatactgcagttgctcttaacctacatttg
tatttcaggcaacacccaggacacctactgtgtgaaggaatactggaagaccttcctatt
gaagggcctccaggggtagatgaagacgacccggttaactctgtccacagcatgaaactg
agcaaggtgtcctttcaggttgataggtcctggagagcccagctgtcatcactgaatgca
tcagtgaggggctcagaaccagaggtttcctgctttgctccgtggtaccagggtgctctg
cgtttggagtccctggaatctggtcaccacacccccactgtgccaagccacgttttcatt
cccggagatgtcccacgtggccggtgtgcttttcctcagaaggagcacatcaagagcagt
gatccagaaagaccgtggaagacaatgcatctgagtgaacgagagcagcccacagagctc
acgtgtctgtctgtgacgggatttactgcactgtttacttgggcagtaggaacgaccagc
tgcaccattggcctctgggacttggagacgcagagcatgcagtgtttttctctcagccag
aagtgtattcctgtagacatcagcggagcccagcagctgtgccttgctttgacagacgat
ggtctatctctgattttgtttggtttgactcaagaggagtttttgaacagactaatgatc
catggcagcgccagcactgtggactccctttgtcatctcaacggctgggaacggtgctca
atccccatccacgctctcgaggctggcatagaaaatcgtcagctggacacagtagatttc
ttcttgaagagcaaggaaaatcttcttactccgtcttcacaatttcctgctcctgatcag
cagtaccccttttcatcccatctgtacctaaggcaggtagaagagatgagcccagccctg
gatttactatgctcagcaattagagaaagtgactcggaaacccaaagcaaacactttgcg
gagcagctgcttcacctcacactgtctttccttaacaagcagataagggagctttttgtt
cacactgaagagctagatgagcatttacagaaaggagtggccattttgaccagctacatc
aatgagcttcggacttttatgataaagtttccatggaaaccaggagatgccatagatgaa
tctgatgtaaatgaaggtgtcgtcacagtgaaggaggaccaggtttgggaggaactcagc
tttgaggaagttattgctgatgccattttaaataacagaataccagaggcacaaactttc
tttaggattactggtcattccgctcaacgactggaggaactggttaggattggcttagat
ctggcatttgacagtttaaaaaagaacaacgtggaggaggcctccaggctcctgaggaac
atgggcttcagtgtggaagatgagttgcttaagatatgcttttatacaactgataaaaat
atacgggactttttggttgaaattttaaaagaaaagaaatgtttttccgcaaaagaaaga
agaactgtagactttgttcatcaacttgaaacactttattctggacacttccaggaaaat
gcacagatgcaggttttccccaggtattggataaaggatcaggactgtttcaaacacaaa
tctgtcttggacacattcctcaaatatgataaaaaagatgagtttcacaaacaggaccac
aggattgcattgaattgggctcactggtgggatctgcaaacacaggaatgtatccttctc
ccaagaataagtccaaaagaatacaaagcatgttccccagaagccctgtggagacacctc
acggctcaccatgactggtcaagcatcagcttgtggatggaagaatttcagacacaggaa
attgagtcacctcagcagagcaagtggccccctctgagtgctgacatcattgagcagggc
acttgctgccacagtcacatgaggaatgagattttagacaagctggccagaagtggcatt
tttcttgcatctgagctggaagactttgaactcctcctcctgaggctgagccggattggg
ggcgtaatgcaggacagcctccccgtgcagaggtacaaatcctctgcagggtgcgacttt
cactcccgattcatcctctactgtttggagcatggcctgcagcatcttctctatgtctat
cttgactattacaaacttagtcctggaaattgtccttttttggaaaagaaagaactacat
gaagctcacccttggcttgaatttttggttcagtgtcggcaagtctccagtaacttgaca
gaaatggctacagttcttagcaggagagcgagcgaggagttgtcaggaaagctgcaggtc
attcagaatgaagacagcgagaactgtttgaagaaagtggacccccagctactgaaggtg
gccttaacaccctacccaaagctcaaagccgcgctcttcccacagtacacggctcctagt
atgctgccctctgatattacactctaccacctcatccagtccttgcccccctttgatcct
agcaggctgttcggctggcagtctgccaacacactagctataggagacacaggcagtcag
ctcccacacttctccagccctgacctggtgagtaaatacgctgtgctggaacgtctgaac
tacgcctattatctacatcacggacgcccatcatttgcctttggcacctttctggtccag
gagttgatcaagagtaagactcccaagcaactgatccagcaagtaggcaaggaggcctat
accttagggctctcttccttcaacaacccttcggtaggggctgcctgtgtctgcttctta
gaattgcttggcctcagcagcctcaagctcagagttgacctgaaaatggcaaatgtaatt
ttgggctccaagcgtaaagatgaagatgctcattccagcttcatcagagagtctctggct
gagaagctgtctaagcttgctgacggtgacacagcaaccacagaagagctgctcgttctc
ttggaggaaggtgtgtgggacagcattgagcagcagggctttaacaggttgtccagcgag
tccagcagccagtgggcattagtgcttcagttctgcatgctccacgacaggaaactgagt
gtgtcctaccttagagaatgtgccaaagcaaatgactggctgcagtttttggttcacagc
cagctgtataactaccacccagcagaggtggaatctcttcttcagtatttcagtcctgtc
cttcagagccacttgaagctggcttctgagaaactgtcatcagggtccatctctagggat
gacagctgcctccaggaactccagaaaaacaaaggagaaacgagtgatttctttgaaatt
ctccaccggtgctcagatgagtctgcctcttggagctggctcctggctgaggcagtgaaa
catcgggttcccatcctcagtgtcctggcctcatgtatccagggtgccagtattgtcccc
tgtctctgtgtttggattgtcacctccgtggaggacaaggttgcagttgaagcagtagga
cacattcagatctctgtagagaaccatcactggagcctggaggacctgtccatcatctgg
agaactgtactgacaagacgcaagagccacactctcacccaaggtttccagctctttatt
aaggattccccacttctattgattatggagatgtatgaactgtgtatgttcttcaagaat
tacgagaaagccaaagttaaacttttggagttccagaaaagccttgaaacacttgacaca
gcggcttcaagggtccttcctatcatacctgcctcgtggataaaggaccaggtgtgtttc
cttttgaaacttatgccacagcagtgtgagacgcagtatgagctggggaaactcctccaa
ctgtttgttgggactgagaagctcttctctgacgggccagacgtgcagaagctgtgtctc
ctcagccaagtactgaaggacacacctatcgccattagccctgcagtcatttccagctac
agcactgagaattttcagcgggaatgtagatctattttggagaagctaaaggcagatggg
cagtttgctgtggccaggagagtggccgagttagcagccctgcctgtggacagcttgctg
attgaacagttaacccaggaaatgcaaacactaacacacactccgcagtggtccctgaaa
caagaaagacttgacttctggaaaaaatgccatgaaaattttaagaaaaactctatttca
aagagagcagcctcttccttcttctctagccaagcccctgaggtgagcgagcaccctgct
gaacagagcagccttgaggagcgccatctgctgcttactctggcaggccactggcttgcc
caagaagagccagttcccgtggaggaactggaggagctggagaaacagatttggatctgc
cgcattgcccagcacacatggggagggcctggagaagccaagcccagcctctctcaacgc
aggttggctgctgctgagctttcttttgatagcttagccagtgagctgtccttctccaag
cttgctgctttgaacacatccaaatacttagaccttaatgatcttccatccaagacaaca
tgtgagaacagactggaacacaaagagcaggagtcactgaacactttgatcgggcagctg
ctggatggtggctgtgtgcatgaagcaagcagagtgtgccagtatttccgtttctatagc
caggatctagtgctggtattgcactgcagagccttggcctctgtagaggccaacatggaa
gacttgcactcagagatccgcgccctcctctcaagtgctgcacagcctgaggatctggag
agcccgagtgtccctcttcggaaaatccatagctcttcaagtttggacagtcagtcactt
gtgatggtaccacccactgatgaggtggcccggaacctccacactctcataagcaagtgt
ctccatgggaagaactactgccggcaggtcctctgtctgtatgagcttgccaaggacttg
ggctgttcctatggagatgttgctgctagggacagtgaagccatgctccgagcaatcttg
gcttctcagcggcctgaccgatgcagacaagcccaggtcttcatcaacacccagggtctt
gaaccagacactgtggctgaactagtggctgaagaggtgacccgggagctactgactcca
tcagagggaacaggagaaaagcaacccttcaacccagcagaggaaagccagacatttctt
cagttaactgctttgtgtcaagaccgtacattggtaggcatgaagttattggacaagatt
ccctctgtcccccacggggagctgtcctgcaccacagagctcctgatcctggcccaccac
tgctttacctttacgtgccacatggaaggtatcatcagagtcctacaggctgcccggatg
cttacagagaaccatttggctcccagcgaggagtacggattagtggtccgcctcctcact
ggcatcgggcgctacaatgagatgacatacatatttgacttgctgcatcaaaagcattat
ttcgaagttctgatgaggaagaagctagacccaactggcaccctgaagacagccctacta
gactacatcaaacgctgccgccccggagacagcgaaaagcacaatatgattgccttgtgc
ttcagcatgtgccgggagataggagagaatcacgaggcagcagcctgcatccaactgaag
ctgattgagtctcagccctgggaggaaagcctcaaggatggagcccaactaaaacagctc
ctgcttaaagccctgactctgatgttggatgcagcagagagttatgccaaggactcctgt
gttcgacaggccctgcactgtaaccggctcaccaagttgataacactacagattcacttt
ctcaacagtggccagaatacaatgcttatcaacttgggccatcagaagctaatggactgt
atcatgaccctacctcggttctaccaggcttctattgtagctgaggcctatgactttgtt
cctgactgggctgaagtactctaccaacaagtgattgttaaaggagactttagttatttg
gaagaatttaagcagcagaagttactaagacctaatatatttgaagacatttccaaaaaa
tataaacaacaccagcctactgacagggtcacagaaaacctgaagaagttactttcatat
tgtgaagatatctacctgtattataagttggcttatgaacacaaattttttgaaattgta
aatatgcttctgaaggaccctcagacgggatgctgccttaaagatatgctcgcaggttag
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integrated database retrieval system
