Mus pahari (shrew mouse): 110319360
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Entry
110319360 CDS
T05929
Name
(RefSeq) sodium channel protein type 1 subunit alpha isoform X1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah04728
Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09150 Organismal Systems
09156 Nervous system
04728 Dopaminergic synapse
110319360
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mpah04040
]
110319360
Ion channels [BR:
mpah04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
110319360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
Neur_chan_memb
Zip
FUT8_N_cat
Pns11_12
PFF1_TM
FraC
Motif
Other DBs
NCBI-GeneID:
110319360
NCBI-ProteinID:
XP_021050506
Ensembl:
MGP_PahariEiJ_G0025057
LinkDB
All DBs
Position
3:complement(52474773..52625050)
Genome browser
AA seq
2009 aa
AA seq
DB search
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQWPPTNASLEEHSIEKNITMDY
NGTLVNETVFEFDWKSYIQDSRYHYFLEGVLDALLCGNSSDAGQCPEGYVCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAAATASEHSREPSAAGRLS
DSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDDDEFHKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASIL
TNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVL
NTLFMAMEHYPMTEHFNHVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIV
TLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYKDCVCKIATDCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM
EVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMH
KGIAYVKRKIYEFIQQSFVRKQKILDEIKPLDDLNNRKDNCISNHTTEIGKDMDCLKDVN
GTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEE
SKEKLNESSSSSEGSTVDIGAPAEEQPVIEPEETLEPEACFTEGCVQRFKCCQISVEEGR
GKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTT
TGDIFEISEVNNHSDCLKLIERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMV
ETDDQSDYVTSILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMF
LAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPD
CDPNKVNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPL
SEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMVSGD
RIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEVSAV
IIQRAYRRHLLKRTVKQASFTYNKNKLKGGANLLVKEDMLIDRINENSITEKTDLTMSTA
ACPPSYDRVTKPIVEKHEQEGKDEKAKGK
NT seq
6030 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcaacttcttcaccagagaa
tcccttgcagctattgaaaggcgcattgcagaagagaaggctaagaatcccaagccagac
aaaaaagatgatgatgaaaatggcccaaagccaaacagtgacttggaagctgggaagaac
cttccatttatctatggagacattcctccagagatggtgtcggagcctctggaggacctg
gacccctactatatcaataagaagacttttatagtattgaataaagggaaggccatcttc
cggttcagtgccacctccgccctgtacattttaactcccttcaatcctcttaggaaaata
gctattaagattttggtacactcattattcagcatgttaattatgtgcactattttgaca
aactgtgtatttatgaccatgagtaaccctcctgactggacaaagaatgtggagtacacc
ttcacaggaatatatacttttgaatctctaataaaaattattgcaaggggcttctgttta
gaagattttactttccttcgtgacccgtggaactggctggacttcactgtcattacattc
gcatatgtgacggagtttgtggacctgggcaatgtctcagcattgagaacattcagagtt
cttcgagcattgaaaactatttcagtcattccaggcctgaagaccatcgtgggggccctg
atccagtcggtgaagaagctgtctgacgtcatgatcctcactgtgttctgtctgagcgtc
tttgctctcatcgggctgcagctcttcatgggcaacctgaggaataaatgtgtacagtgg
cctcccaccaatgcttcccttgaggaacacagcatagagaagaatataactatggattac
aatggcacacttgtaaatgaaaccgtgtttgaatttgactggaaatcatacattcaagac
tcaagatatcattatttcctggagggtgttttagatgcactgctgtgtggaaatagctct
gatgcaggccaatgtccagaaggatatgtgtgtgtaaaagctggtagaaaccctaattat
ggttacacaagctttgataccttcagttgggcatttttgtccctgtttcgactgatgact
caggacttctgggaaaatctataccaactgacattgcgtgctgctggcaaaacctacatg
atattttttgtgctagtcattttcttgggctcattctacctgataaacttgatcctggct
gtggtggccatggcctatgaggaacagaatcaggccacgctggaggaggctgaacagaaa
gaggctgagtttcagcagatgttggagcaacttaagaagcagcaggaggccgcacagcag
gcagcggctgcaacagcctcagaacattccagggagcccagtgcagcaggcaggctctca
gacagctcttcagaagcctctaagttgagttcgaagagtgctaaggaaagacggaatcgg
aggaaaaaaaggaaacagaaagagcagtctggaggagaggagaaagacgatgatgagttc
cacaaatctgagtctgaagacagcatccggaggaaggggtttcgcttctccatagaaggg
aatagactgacctatgaaaagaggtactcttccccgcatcagtctctgttgagtatccgt
ggttccctcttctccccaagacgcaatagcagaacaagccttttcagctttcgagggcga
gccaaggatgtggggtctgagaatgactttgcagatgatgaacacagcacctttgaggac
aatgagagccgtagagactcgctgtttgttccccggagacacggagagcgacgcaacagt
aacctgagccagaccagcaggtcctcccgaatgttggcagtgtttccagccaatgggaag
atgcacagcacagtggattgcaatggtgtggtttccttggttggtggaccctcagttcct
acatcgccagttggacagcttctgccagaggtgataatagataagccagctactgatgac
aatggaacaaccactgaaactgagatgagaaagaggaggtcgagctctttccatgtttcc
atggactttctagaagatccttcccagaggcaaagggcaatgagtatagccagcatctta
acaaatacagtagaagaactagaagaatccaggcagaaatgtccaccctgttggtataaa
ttttccaacatattcttaatttgggactgttctccatattggctgaaagttaaacatatt
gtcaacctggtggtgatggacccatttgttgacctggccatcaccatctgcattgtgtta
aatacgctcttcatggccatggagcactaccccatgactgaacatttcaaccatgttctt
acagtgggaaacttggtcttcactgggatctttacagcagaaatgttcctgaaaatcatt
gcaatggatccttactattacttccaagaaggctggaatatctttgatggcttcattgtg
acactcagcctggtagaacttggccttgccaatgtggaaggattgtcggttctccgttca
tttcgactgctccgagtgttcaagttggcaaagtcttggcccacactgaatatgctaatt
aagatcatcggtaactcagtgggcgcactgggcaacctgactctggtgttggccatcatc
gtcttcatttttgccgtggtcggcatgcaactatttggcaaaagttacaaagattgtgtc
tgcaaaattgccactgactgcaaactcccacgctggcacatgaatgacttcttccactcc
ttcctgatcgtgttccgcgtgctgtgtggggagtggatagagaccatgtgggactgcatg
gaggtcgcaggacaagccatgtgccttactgtcttcatgatggtcatggtgattgggaac
cttgtggtcctgaacctctttttggccttgcttctgagctcatttagtgcagataacctt
gcagccactgatgatgacaatgagatgaacaacctgcagattgctgtggacaggatgcac
aaaggaatagcttatgtaaaaagaaaaatatatgaattcattcaacaatcctttgttagg
aaacagaagattctagatgaaattaagccacttgatgatctaaacaacagaaaagacaat
tgtatctctaaccacacgacagaaattgggaaagatatggactgtctgaaagatgtgaat
ggaaccacaagtggcatagggacaggaagcagcgtggagaagtacatcattgatgagagt
gactacatgtcattcataaacaaccccagcctcactgtgacagtgcccattgctgtggga
gagtctgactttgagaacttaaacacagaagattttagcagtgaatcagatctagaggaa
agcaaagagaaactcaacgaaagcagtagctcctcagagggaagcacagtagacatcggg
gcgcctgcagaggaacagcctgtcattgaaccagaagaaacccttgagcccgaagcttgc
ttcactgaaggctgtgtccagagattcaagtgctgtcaaatcagcgtggaagaaggaaga
gggaaacagtggtggaacctacggagaacgtgcttccgaatcgttgagcacaactggttt
gagaccttcattgtgttcatgattctcctcagtagtggtgccctggcctttgaggatata
tatattgatcagcgaaagacgatcaaaaccatgctggagtatgccgacaaagtcttcact
tacatcttcatcctggagatgctcctcaaatgggtggcctatggttatcaaacatatttc
accaatgcctggtgttggctggacttcttaattgttgatgtttcattggtcagcttaaca
gcaaatgccttgggttactctgaactcggggccatcaaatccctaaggacactaagagct
ctgagacccctaagagccttatcaagatttgaagggatgagggtggttgtgaatgccctg
ttaggagcaattccatccatcatgaatgtgcttctggtttgccttatattctggctaatt
ttcagcatcatgggcgtaaatttgtttgctggcaaattctaccactgtgttaacaccaca
actggtgacatatttgagatcagcgaagtcaataatcattctgattgcctaaaactaata
gaaagaaatgagaccgcccggtggaaaaatgtgaaagtaaactttgataatgtaggattt
gggtatctttctttgcttcaagttgccacgtttaaggggtggatggatatcatgtatgct
gcagttgattccagaaatgttgaactacagcctaagtatgaggaaagcctatacatgtat
ctgtacttcgtcatcttcatcatcttcgggtccttcttcaccctgaatctgtttattggt
gtcattatcgacaatttcaaccagcaaaagaagaagtttggaggtcaagacatctttatg
acagaagaacagaagaaatattataatgcaatgaagaaattaggatcaaaaaagccacaa
aagcctatccctcgacctggaaacaaatttcaaggaatggtgtttgactttgtaaccaga
caagtgtttgacatcagcatcatgatcctcatctgtctgaacatggttacaatgatggtg
gaaacggatgaccagagcgattatgtgacaagcattttgtcacgcatcaacctggtgttc
atcgtcctgttcaccggcgagtgtgtgctcaagctcatctccctccgccattattatttc
accattggatggaatattttcgattttgtggtggtcatcctctccattgtagggatgttt
ctcgcggagctaatagaaaagtatttcgtgtcccctaccctgttccgagtcatccgcctg
gccaggattggacgaatcctacgcctgatcaaaggtgccaaggggatccgcacgctgctc
tttgctctgatgatgtcccttcctgcactgttcaacatcggcctcctgcttttcctggtc
atgttcatctacgccatctttgggatgtccaactttgcctacgttaagagggaagttggg
attgatgacatgttcaactttgagacctttggcaacagcatgatctgcctgttccaaatc
accacctctgcgggctgggacggattgctggcccccatcctcaacagtaaaccccctgac
tgtgaccctaataaagttaaccctggaagctcagtgaagggagactgtggaaatccatct
gtggggattttcttttttgtcagctacatcatcatatccttcctggttgtggtgaacatg
tacattgctgtcatcctggagaacttcagtgttgccacagaagaaagtgcagagcccctg
agtgaggatgactttgagatgttctacgaggtctgggagaagttcgaccctgacgccacc
cagttcatggaatttgaaaaattatctcagtttgcagctgctcttgaaccccctctcaat
ttgccacaaccaaacaaacttcagctcattgctatggacctgcccatggtgagtggagac
cgcatccactgcctggacatcttatttgcttttacaaagcgggtcttgggtgagagcgga
gagatggatgctcttcgaatccagatggaagagaggttcatggcttccaacccctccaag
gtctcttatcagccaatcactactacattaaaacgcaaacaagaggaggtgtcagctgtt
atcattcagcgagcttataggcgccaccttttgaagcgaacagtaaagcaagcttcattc
acatacaataagaacaaactcaaaggtggggctaatcttcttgtaaaagaagacatgctc
attgacagaataaatgaaaactctattacagagaaaactgacctgacaatgtccacagca
gcttgtccaccctcctacgatcgggtgacaaaaccaatcgtggagaaacacgagcaggaa
gggaaagatgaaaaagccaaagggaaatga
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integrated database retrieval system
