Mus pahari (shrew mouse): 110319800
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Entry
110319800 CDS
T05929
Symbol
Trpc4
Name
(RefSeq) short transient receptor potential channel 4 isoform X1
KO
K04967
transient receptor potential cation channel subfamily C member 4
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah04360
Axon guidance
mpah04929
GnRH secretion
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09150 Organismal Systems
09152 Endocrine system
04929 GnRH secretion
110319800 (Trpc4)
09158 Development and regeneration
04360 Axon guidance
110319800 (Trpc4)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mpah04040
]
110319800 (Trpc4)
Ion channels [BR:
mpah04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
110319800 (Trpc4)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
TRP_2
Ank_2
Ank
Ank_4
Ank_3
PKD_channel
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
110319800
NCBI-ProteinID:
XP_021051037
Ensembl:
MGP_PahariEiJ_G0026429
LinkDB
All DBs
Position
4:47227556..47391843
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AA seq
988 aa
AA seq
DB search
MAQFYYKRNVNAPYRDRIPLRIVRAESELSPSEKAYLNAVEKGDYASVKKSLEEAEIYFK
ININCIDPLGRTALLIAIENENLELIELLLSFNVYVGDALLHAIRKEVVGAVELLLNHKK
PSGEKQVPPILLDKQFSEFTPDITPIILAAHTNNYEIIKLLVQKGVSVPRPHEVRCNCVE
CVSSSDVDSLRHSRSRLNIYKALASPSLIALSSEDPFLTAFQLSWELQELSKVENEFKSE
YEELSRQCKQFAKDLLDQTRSSRELEIILNYRDDNSLIEEQSGNDLARLKLAIKYRQKEF
VAQPNCQQLLASRWYDEFPGWRRRHWAVKMVTCFIIGLLFPVFSVCYLIAPKSPLGLFIR
KPFIKFICHTASYLTFLFLLLLASQHIDRSDLNRQGPPPTIVEWMILPWVLGFIWGEIKQ
MWDGGLQDYIHDWWNLMDFVMNSLYLATISLKIVAFVKYSALNPRESWDMWHPTLVAEAL
FAIANIFSSLRLISLFTANSHLGPLQISLGRMLLDILKFLFIYCLVLLAFANGLNQLYFY
YEETKGLSCKGIRCEKQNNAFSTLFETLQSLFWSIFGLINLYVTNVKAQHEFTEFVGATM
FGTYNVISLVVLLNMLIAMMNNSYQLIADHADIEWKFARTKLWMSYFEEGGTLPTPFNVI
PSPKSLWYLVKWIWTHLCKKKMRRKPESFGTIGVRAHSISVTKAVEHRRAADNLRRHHQY
QEVMRNLVKRYVAAMIREAKTEEGLTEENVKELKQDISSFRFEVLGLLRGSKLSTIQSAN
AASSAESDEKNRSEGNGKDKRKNLSLFDLTTLIHPRSAVIASERHNLSNGSALVVQEPPR
EKQRKVNFVADIKNFGLFHRRSKQNAAEQNANQIFSVSEEITRQQAAGALERNLELESKG
LASRGDRSIPGLNEQCVLVDHRERNTDTLGLQVGKRVCSTFKSEKVVVEDTVPIIPKEKH
AHEEDSSIDYDLSPTDTAAHEDYVTTRL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggctcagttctattacaaaagaaatgtcaacgccccctacagagaccgcatcccactg
aggattgtcagagcagagtctgaactctcaccatcagagaaagcctacttgaatgctgtg
gagaagggggactatgcaagcgtcaagaaatctctggaggaagctgagatttattttaaa
atcaacattaactgcattgacccccttggaaggactgccctcctcattgccattgaaaat
gagaacctggagcttattgaactattgttgagtttcaatgtctacgtaggcgatgcgctg
cttcacgccatcagaaaagaggtggttggagccgtggagctactgctgaaccacaaaaag
ccaagtggagagaagcaggtgcctcccattctccttgataaacagttctcggaattcact
ccagacatcacacccatcatcctggctgcacatacaaataattacgagataatcaaactt
ttggtccagaaaggtgtctcggtgcccagaccccacgaggtccgctgtaactgtgttgag
tgtgtctccagctcggatgtggacagcctcaggcattcacggtccaggctcaacatctac
aaggcgttggccagcccctcactcattgccctgtcaagcgaagaccctttcctcactgcc
tttcagttaagctgggagttgcaagaactcagcaaggtggagaacgaattcaagtcagag
tatgaggagctgtctagacagtgcaaacaatttgccaaggacctcctagatcagacacgg
agttccagagagctggaaatcattcttaattaccgcgatgacaatagcctgatcgaagaa
cagagtggaaatgatcttgcgaggctaaaattagccattaagtaccgtcaaaaagagttt
gttgctcagcccaactgccagcagctgctcgcttcccgctggtacgatgagttcccaggc
tggaggagaagacactgggcggtgaagatggtgacatgtttcataataggactactgttc
cccgttttctccgtgtgctacctgatagctcccaaaagcccacttggactgttcatcaga
aagccatttatcaagtttatctgccacacggcctcctatctgacctttttgtttctgctg
ctgctagcctctcagcacatcgacaggtcagacttgaacaggcaaggtccaccaccaacc
atcgtggagtggatgatattaccgtgggtcctgggttttatatggggagagattaaacag
atgtgggatggtggactccaggattacatccacgactggtggaatctaatggactttgtg
atgaactccttgtatctggcaacaatctccttgaagattgtcgcgtttgtaaagtacagt
gctctgaacccacgggaatcatgggacatgtggcaccccaccctggtggccgaggcatta
tttgctattgcaaacatcttcagctccctccggctgatctctctgttcactgccaattct
cacctggggcccctgcagatttctctggggaggatgcttctggacatcctgaagttctta
ttcatctactgcctcgtgctgctagcttttgcaaatggcctaaatcaactctacttctac
tatgaagaaacaaaggggttaagctgcaaaggcatccggtgcgagaaacagaacaacgca
ttttccacgttatttgagacactacagtccctgttttggtcaatatttggactcatcaat
ctctatgttaccaatgtcaaagcccagcatgagtttactgagtttgttggggccaccatg
tttggcacatataatgtcatctctctggttgtcctgctgaacatgctaattgctatgatg
aataattcttaccaactaattgccgaccatgcagacatagaatggaaatttgctcgaaca
aagctttggatgagctactttgaagaaggaggtaccctgcctacacctttcaatgtcatc
ccaagccccaagtctctgtggtacctggtcaagtggatatggacacatttatgtaagaaa
aagatgagaaggaagccagaaagcttcgggacaattggggtaagggcacattctattagt
gttacaaaagctgtcgagcatcggcgtgctgctgataacttgagaagacatcaccaatac
caagaggtgatgaggaacctggtgaagaggtacgtggcagccatgatcagagaggcaaaa
acggaagaaggcttgacggaggagaatgttaaggaactaaagcaagacatttctagcttc
cgcttcgaagttctgggattgctcagaggaagcaagctctctacaatacagtcagccaac
gcggcgagttcagcggagtctgacgagaagaaccggagcgaaggtaatggcaaggacaag
agaaagaatctcagcctctttgatttaaccactctgatccacccgaggtcggcagtcatt
gcctccgagagacataacctaagcaatggttctgccctggtggtgcaggagccgcccagg
gagaagcagaggaaagtgaattttgtggctgatatcaaaaacttcgggttatttcataga
cggtcaaaacaaaatgctgctgagcaaaacgcaaaccaaatcttctctgtttcagaagaa
attactcgtcaacaggcggcaggagcacttgagcgaaatctcgaactggaatccaaagga
ttagcttcacggggtgaccgcagcattcctggtctcaatgaacagtgtgtgctagtagac
catagagaaaggaatacggacactttgggtttgcaggtaggcaagagagtgtgctccacc
ttcaagtcggagaaggtggtggtggaagacaccgtccctattataccaaaggagaaacac
gcccacgaggaggactcgagcatagactatgatttaagccccacggacacagctgcccac
gaagattatgtgaccacaagattgtga
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