Mus pahari (shrew mouse): 110319965
Help
Entry
110319965 CDS
T05929
Symbol
Vcam1
Name
(RefSeq) vascular cell adhesion protein 1 isoform X1
KO
K06527
vascular cell adhesion molecule 1
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah04064
NF-kappa B signaling pathway
mpah04514
Cell adhesion molecules
mpah04668
TNF signaling pathway
mpah04670
Leukocyte transendothelial migration
mpah04933
AGE-RAGE signaling pathway in diabetic complications
mpah05143
African trypanosomiasis
mpah05144
Malaria
mpah05417
Lipid and atherosclerosis
mpah05418
Fluid shear stress and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09130 Environmental Information Processing
09132 Signal transduction
04064 NF-kappa B signaling pathway
110319965 (Vcam1)
04668 TNF signaling pathway
110319965 (Vcam1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
110319965 (Vcam1)
09150 Organismal Systems
09151 Immune system
04670 Leukocyte transendothelial migration
110319965 (Vcam1)
09160 Human Diseases
09174 Infectious disease: parasitic
05144 Malaria
110319965 (Vcam1)
05143 African trypanosomiasis
110319965 (Vcam1)
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
110319965 (Vcam1)
05418 Fluid shear stress and atherosclerosis
110319965 (Vcam1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
110319965 (Vcam1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
mpah04515
]
110319965 (Vcam1)
04090 CD molecules [BR:
mpah04090
]
110319965 (Vcam1)
04091 Lectins [BR:
mpah04091
]
110319965 (Vcam1)
Cell adhesion molecules [BR:
mpah04515
]
Immunoglobulin superfamily
VCAM
110319965 (Vcam1)
CD molecules [BR:
mpah04090
]
Proteins
110319965 (Vcam1)
Lectins [BR:
mpah04091
]
I-type lectins (Siglecs)
110319965 (Vcam1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
C2-set
Ig_2
V-set
C2-set_2
Ig_4
ICAM_N
Ig_6
Ig_5
ICAM1_3_5_D2
Izumo-Ig
C2-set_3
Adhes-Ig_like
Motif
Other DBs
NCBI-GeneID:
110319965
NCBI-ProteinID:
XP_021051395
Ensembl:
MGP_PahariEiJ_G0027008
LinkDB
All DBs
Position
4:complement(104821079..104840701)
Genome browser
AA seq
739 aa
AA seq
DB search
MPVKMVAIFGASTVLWILFAVSQAFKIEISPEYKTIAQIGDSMALTCSTTGCESPSFSWR
TQIDSPLNGKVRTEGSKSVLTMEPVSFENEHSYLCTATCGSGKLERSIHVDVYSFPKDPV
IQFSAPLEVGKPVTVKCLAPDIYPVYRLEIELFKGDHLMKRQEFFSEEMTKSLETKSLEV
TFPPAIEDIGKALVCRAKLHIDQIDSTLKERETAKELQVYISPTNTSISVHPSTKLHEGG
AVTMTCSSEGLPAPEIFWSKKLDNGVLQLLSGNATLTLIAMRMEDSGIYMCEGVNLIGRD
KTEVELVVQEKPFTVDISPGSQVAAQVGDAVVLTCAAIGCDAPSFSWRTQSDSPLNGEVR
NEGAKSTLTLSSVSFEDEHSYRCAVTCLQRTLEKRTQVEVYSFPEDPEIEMSGPLVHGRP
VTVNCTVPNVYPFDHLEIELLKGETTLMKKYFLEEMGIRSLETKSLEMTFIPTTEDTGKS
LVCLARLHSGEMESEPKQRQSVQPLYVNVAPQETTIWVSPSPTLEEGSPVNLTCSSDGFP
APKILWSRQLNNGELQPLSENTTLTFMSTKMEDSGIYVCEGINQAGVSRKSVELIIQVSP
KDIQLTVFPSKSVKEGDTVIISCTCGNVPETWIILKKKAKTGDMVLKSVDGSYTIRQAQL
QDAGIYECESKTEVGSQLRSLTLDVKGRENNKDYFSPELLALYFASSLVIPAIGMIIYFA
RKANMKGSYSLVEAQKSKV
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtgaagatggttgcgatctttggagcctcaacggtactttggatactgtttgca
gtctctcaagcttttaaaatcgagatctcccctgaatacaaaacgatcgctcagatcggc
gactccatggccctcacttgcagcactacaggctgcgagtcaccatcgttctcatggaga
acccagatagacagcccactaaacgggaaggtgagaacagaggggtccaagtccgttctg
accatggagcctgtcagttttgagaatgaacactcttacctgtgcacagcaacatgtggc
tctgggaagctggaaagaagtatccacgtggacgtctactctttccccaaggatccagtg
attcaattcagtgcccccctggaggttgggaagccagtcaccgtcaagtgtttggctcca
gacatttacccagtttacagactggagattgaactgttcaaaggtgaccatctcatgaaa
agacaggagtttttttcagaagagatgacaaagtctctggaaaccaaaagtttggaagta
acctttcctcccgccatcgaggatatcggaaaagctcttgtttgccgagctaaattacac
attgaccaaattgattctacgctcaaagaaagggagactgccaaagaactacaagtctac
atctctcccacgaacacatcgatctctgtacatccttccacaaagcttcatgagggtggt
gctgtgacaatgacctgttccagcgagggtctaccagctcctgagattttctggagcaag
aagttagataatggagttctccagcttctctccggaaatgctaccctcaccttaattgct
atgaggatggaagactctggaatctatatgtgtgaaggagttaatctgattgggagagac
aaaacagaggtggaattagttgttcaagagaaaccgtttaccgttgacatctcccccgga
tctcaggtggctgcacaagttggggatgcggttgttctgacatgtgctgctattggctgt
gatgccccttccttttcttggagaacccagtcagacagtcccctcaacggggaggtgagg
aatgagggggccaaatccacactgacgttgagctctgtgagttttgaggatgaacactct
taccggtgcgctgtgacctgtctgcaaaggacactggaaaagagaacccaggtggaggtc
tactcattccctgaagacccagaaattgaaatgagtgggccacttgtgcatgggagacct
gtcactgtcaactgcacggtccctaatgtgtatccctttgaccatctggagattgaatta
ctgaagggggagactacactgatgaagaaatattttttggaggaaatgggcataaggtcc
ctagagaccaaaagtttggaaatgaccttcatccccaccactgaagataccgggaaatct
cttgtttgcctcgctaggttacacagtggtgaaatggaatctgaacccaaacagaggcag
agtgtacagcctctttatgtcaacgttgccccccaggaaaccaccatctgggtcagcccc
tctcccaccctagaggagggcagtcctgtgaacctgacctgctcaagtgatggttttcca
gctcccaaaatcctgtggagcagacagctaaataacggggaactgcagcctctttctgaa
aatactaccctcaccttcatgtctacaaaaatggaagattccggcatttatgtgtgtgaa
gggattaaccaggctggagttagcagaaagtcagttgaactgattatccaagtctctcca
aaagacatacagcttacagtctttccatctaagagtgtcaaagagggagacaccgtcatt
atctcctgcacttgtggaaatgtgcccgaaacgtggataatcctgaagaagaaagcaaag
accggagacatggtattaaagtctgtggatggctcatacaccatccgccaggcacagctg
caggatgccggcatatacgagtgtgaatctaagactgaagtgggctcacaattaagaagt
ttaacacttgatgtgaaaggaagagaaaataacaaggactacttttcccccgaactcctt
gcactctactttgcatcttctttggtaatacctgccatcgggatgatcatttactttgca
agaaaagccaacatgaaaggatcgtacagtctggtggaggcacagaaatcaaaagtgtag
DBGET
integrated database retrieval system
