Mus pahari (shrew mouse): 110320090
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Entry
110320090 CDS
T05929
Symbol
Ddx20
Name
(RefSeq) probable ATP-dependent RNA helicase DDX20
KO
K13131
ATP-dependent RNA helicase DDX20 [EC:
5.6.2.7
]
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mpah03041
]
110320090 (Ddx20)
Enzymes [BR:
mpah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110320090 (Ddx20)
Spliceosome [BR:
mpah03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
SMN complex factors
110320090 (Ddx20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Motif
Other DBs
NCBI-GeneID:
110320090
NCBI-ProteinID:
XP_021051648
Ensembl:
MGP_PahariEiJ_G0026919
LinkDB
All DBs
Position
4:complement(95378023..95387051)
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AA seq
829 aa
AA seq
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MAAAAAAVEAFEAPAALTTSESAMAAEPAAAPVQAAEPTPASPWTLRTAHDIGGPRTRTG
DVVLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTC
VFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQD
KTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLP
ASKQMLAVSATYPEILANALTRYMRDPTFVRLNPSDPSLIGLKQYYQVVNSYPLAHKIFE
EKTQHLQELFSKVPFNQALVFSNLHSRAQHLADILSSKGFPTECISGNMNQNQRLDAMAK
LKQFHCRVLISTDLTSRGIDAEKVNLVVNLDVPFDWETYMHRIGRAGRFGTLGLTVTYCC
RGEEENMMMKIAQKCNINLLPLPDPIPPGLMEECLNWDVEVKGAMHTYSSPTIATQSPKK
QVQKLEKAFQSQRTPGNQVPSPRNTSVSALSARSKHSKQKLPVKSHSECGVLEKAAPPQE
LGCTTQLEEQVKNSVQSSVEDSNNSQQQAKDTSPGSLPKIPCLSSFKVHQPCTLTFAELV
EDYEHYIKEGLEKPVEIIRHYTGPEAQTGNPQNGFVRNRVSEDRAQMLVSSSQSGDSESD
SDSCSSRTSYQSKGSKSYLEGSSDTQLKDSECIPVGGPLSLEQVPNGNDTPTQVEYQEAS
ETQVKARHKEGANQRSKQSRRNPPRRSSYRAQTEPQEEGWYDCHREATASFSDTYQDYEE
YWRAYYRAWQEYYAAASHSYYWNAQRHPSWMAAYHMNTVYLQEMMRGNQ
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggcggcggcggtggaggcgtttgaagccccggcggccttgacaacctcc
gagtccgctatggctgcggagcctgcggccgcgccggtgcaggctgcggagccgactccg
gcctccccgtggaccctgcggaccgctcacgacatcggcgggccgcgcacacgtaccggg
gacgtggtgctggcggagcccgcggacttcgagtcgctgctgctgtcgcggccggtgctg
gaggggctgcgggcggccggcttcgagagaccctctccggtgcagctcaaggccatcccg
ctggggcgctgcggactcgatttaattgtccaggctaagtctggcactggaaaaacttgt
gtattctccaccattgctctggactctctgattcttgaaaactatagtactcagattttg
atattggctcccacaagagaaattgctgttcagatacactctgttatcacagccattgga
ataaaaatggaaggattagaatgtcatgtctttattggagggactccattatcgcaagac
aaaaccagacttaaaaagtgtcatattgctgttggatctcctggtagaattaaacagctc
atagaacttgactacctgaatccaggcagtatccgtctctttattcttgatgaagcagat
aagcttttagaagaaggcagtttccaggagcaaataaattggatttactcctctttacct
gcgagtaaacagatgttggcagtatctgctacctaccctgaaattttggctaatgctttg
acaaggtatatgagagatcccacttttgtaagattgaatcccagcgatccaagtctcata
ggtttgaagcagtactaccaagttgtcaattcttaccctttggctcataagattttcgag
gaaaagactcagcacttacaggaactttttagtaaagtcccatttaatcaagccttggtg
ttttctaatttgcacagcagagctcaacatttggctgacatcctttcttctaaaggtttt
cctactgaatgcatttcaggtaacatgaatcagaatcagcgccttgatgctatggcgaaa
ctgaagcagtttcattgcagagtcctcatttctacagatttgacttcccgtgggattgac
gcggagaaggttaacctcgttgtaaatctggacgtgccgttcgactgggagacttacatg
caccggattggcagagctggccgttttggtacattgggactgacagtgacctactgttgt
agaggagaagaagaaaatatgatgatgaaaattgcccagaaatgtaatatcaaccttctt
ccattaccggaccctattcctcctggcctgatggaagaatgcttgaattgggatgtggaa
gttaaaggtgccatgcatacttacagctcaccaactatagctactcagtcccccaaaaag
caagttcaaaaactagagaaagcctttcaatctcaaagaactcctggtaaccaagtgcct
tcccctagaaatacttctgtatctgcactatcagccagatcaaaacacagcaaacaaaag
cttcctgtgaaaagccactcagagtgtggagtcctagaaaaggcagctccaccacaagag
ttgggctgtaccacacagctggaagagcaagtcaagaattctgttcagagctctgttgag
gactccaataacagccagcagcaggccaaagatacctcacctgggtcactccctaaaatt
ccttgtctgtcttcttttaaagtccatcagccgtgtactttgacttttgcagaactggta
gaagattatgagcactatattaaagaggggttagagaaacctgtggaaattatccggcac
tacacagggcctgaggctcagaccgggaatcctcagaatggctttgtgagaaatagagtt
tctgaagatagagcacagatgttggtgagtagtagccagtctggagactcagagagtgac
agcgattcttgcagctcaaggacttcttaccagagcaaaggcagtaagtcttacttggaa
ggctcctcagacactcagttgaaagactctgaatgtattcctgtgggtggccctctctct
ttggaacaagttccgaatggaaatgataccccaactcaagtggagtatcaagaagcctct
gagacccaggtaaaggcaaggcataaagaaggagctaaccaaaggtctaagcaaagtcgg
agaaacccaccacggcgctcctcttaccgagcacaaacagaaccccaggaagagggttgg
tatgattgtcacagggaagcaaccgcgagtttttctgatacctaccaggattatgaggag
tactggagagcatattacagggcatggcaggagtattatgctgctgcttcccattcatac
tattggaatgctcagagacatccaagctggatggctgcctatcatatgaatacagtttat
ctacaagagatgatgcgtggtaaccagtga
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