Mus pahari (shrew mouse): 110321009
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Entry
110321009 CDS
T05929
Symbol
Patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110321009 (Patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110321009 (Patl1)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110321009 (Patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
110321009 (Patl1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
110321009
NCBI-ProteinID:
XP_021052751
Ensembl:
MGP_PahariEiJ_G0014233
LinkDB
All DBs
Position
1:123919358..123953753
Genome browser
AA seq
770 aa
AA seq
DB search
MFRYESLEDCPLDEDEDAFQGLGEEDEEIDQFNDDTFGSGAVDDDWQEAHERLAELEEKL
PVAADEQTGNGERDEMDLLGDHEENLAERLSKMVIENELEDPAIMRAVQTRPVLQPQPGS
LNSSIWDGSEVLRRIRGPLLAQEMPTVSVLEYALPQRPPQGTEDDRDLSERALPRRSTSP
IIGSPPVRAVPIGTPPKQMAVPSFNQQILCPKPVHVRPPMPPRYPAPYGERISPNQLCSV
PNSSLLGHPFPPSVPPVLSPLQRAQLLGGAQLQPGRMSPSQFARVPGFVGSPLAVMSPKL
LQGRVGQMLPPAPSFRAFFSAPPPTTPPPQQHPPGPGPHLQNLRPQAPVFRADTTHLHPQ
HRRLLHQRQLQRRNQHRNLNGTGDRGGHRSSHQDHLWKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDFYYQNYFEKLEKLSAAEEIQGDGPKKERTKLITPQVAKLEHAYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRKTLVIIEKTYSLLLDVEDYE
RRYLLSLEEERPALMDERKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARI
LPFLSTEQAADILMATARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVTVTSLLQQLM
NLPQSASAPAPSNSHLTAVLQNKFGLSLLLILLSRGEDLQSSDPAIESTQNNQWTEVMFM
ATRELLRIPQAALAKPISIPTNLVSLFSRYVDRQKLNLLETKLQLVQGIR
NT seq
2313 nt
NT seq
+upstream
nt +downstream
nt
atgttccgctacgagtctttggaggattgtcctctagatgaagatgaagatgcatttcaa
ggcctgggagaagaagatgaagaaattgatcaatttaatgatgatacctttgggtcaggt
gcagttgatgatgattggcaggaagcacatgagcgcctggctgagttggaagagaagcta
cctgtggcagctgatgaacaaacgggcaatggagagagagatgagatggacttgttgggt
gaccatgaggagaatctagcagaaaggctcagtaagatggtgattgaaaatgagctagaa
gatccagctatcatgagggcagtgcagaccaggccagttttacaacctcaaccgggaagt
ttgaattccagcatctgggatggatctgaagttctgaggcgaatccgtggaccactactt
gctcaggaaatgcctacagtgtctgtattagaatacgccttgcctcagaggcccccacaa
ggcacagaagatgatcgggacctttctgagcgagctttaccaaggcggtcaacatcgcct
atcattggaagtcctccagttagagccgttcctataggcaccccacctaagcagatggct
gttcccagcttcaaccaacagattctctgtccgaagccagttcatgttcggcccccaatg
ccgccacgctatcctgctccctatggtgagaggatatctccaaaccagctctgcagtgtc
ccgaactcctccctcctgggccacccttttcctcctagtgttcctcctgtactcagtccc
ctgcagagagctcagcttcttgggggagcacagctacagcctggacgaatgtctcccagc
cagtttgcacgggtccctggatttgttggtagcccactggctgtcatgagtcctaagttg
ctacaagggcgcgttgggcagatgcttcccccagcaccaagcttccgtgccttctttagt
gctccaccccccactacaccacctccacagcagcatccccctggcccaggacctcaccta
caaaacctcagacctcaggccccagtgtttagagcagacacaactcacctccatccacag
caccgacgcctgttgcatcagaggcagctgcagaggagaaatcagcatcggaatctcaat
ggtactggagacagaggaggtcaccggtccagtcatcaagatcatctctggaaagatcca
tatgctaatctaatgttgcagcgggaaaaggattgggtctctaaaatacagatgatgcag
ctgcagagcactgatccctacctggatgatttctattaccagaattactttgaaaaactg
gagaaattgtcagctgctgaagaaatacaaggtgatggccctaagaaggagcgtaccaag
ctcatcacccctcaggtggccaaactggagcatgcttataagcctgtgcagtttgagggc
tctttggggaagcttactgtctctagtgtgaataatcctcggaagatgatagatgctgtt
gtgacatctcggagtgaggatgatgaaacaaaagaaaaacaagttcgggataagagaaga
aaaacccttgtcataattgagaaaacctatagtttactccttgatgtggaggattatgaa
aggcgctatctcctaagtctagaagaagagcggcctgccctgatggatgaaagaaagcac
aaaatttgtagcatgtatgacaacctgaggggcaaattgcctggacaagagaggccaagt
gatgaccactttgtacagatcatgtgtatccgaaaagggaagagaatggttgcccgcatt
ctccctttcctctccacagagcaagcagctgacattctcatggcaactgccaggaacctc
cctttccttatcaagaaggatgcccaagatgaggtgctgccatgcttactgagtcccttc
tctctcctcctttatcatcttccttcagtgactgtcaccagccttctgcaacagctaatg
aacctacctcaaagtgcaagtgcaccagcaccctccaattctcacctcaccgctgtgctc
cagaacaagtttggcttgtcactgctcctaatcctactaagccgtggggaagacctacag
agttcagatcctgctatagaatcaacgcaaaataaccagtggacagaggtgatgttcatg
gcaacccgagaacttctacggatcccccaagcagccctggccaaaccaatctctatccct
acaaacctagtgtcccttttttctcgctatgttgaccggcagaaactgaacttgctggaa
acaaaactgcagctggttcaggggatacgataa
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