Mus pahari (shrew mouse): 110321582
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Entry
110321582 CDS
T05929
Symbol
Copa
Name
(RefSeq) coatomer subunit alpha isoform X1
KO
K05236
coatomer subunit alpha
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mpah04131
]
110321582 (Copa)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mpah04147
]
110321582 (Copa)
Membrane trafficking [BR:
mpah04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
110321582 (Copa)
Exosome [BR:
mpah04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110321582 (Copa)
Exosomal proteins of bladder cancer cells
110321582 (Copa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
110321582
NCBI-ProteinID:
XP_021053564
Ensembl:
MGP_PahariEiJ_G0028122
LinkDB
All DBs
Position
5:144643991..144686099
Genome browser
AA seq
1233 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEITKKIQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHEHSCPLPLTAIVICNRKLDALCNIHENIRVK
SGAWDESGVFIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLT
IDPTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSL
ALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITG
NLEKLRKMMKIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEA
ESLKETFDPEKETIPDIDPNAKLLQPPAPIMPLDTNWPLLTVSKGFFEGSIASKGKGGAL
AADIDIDTVGTEGWGEDAELQLDEDGFVEAPEGLGEDALGKGQEEGGGWDVEEDLELPPE
LDVPSGVSGSAEDGFFVPPTKGASPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVIQ
FGPYKQLFLQTYARGRTTYQALPCLPSMYSYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQ
LCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLCMEIERK
KLPKETLDQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLEL
GPKPEVAQQTRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGAC
YSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgctaaccaaattcgagacgaagagcgcgcgggtcaaaggccttagttttcatcccaaa
agaccctggatcctgaccagtttacacaatggggtcatccagttatgggactatcgaatg
tgcaccctaattgacaaatttgatgaacatgatggtccagtgcgtggcattgacttccat
aagcagcagccactgttcgtctctggaggcgatgactataagattaaggtttggaattac
aaacttcggcgctgcctgttcacattgcttgggcacttggattatatccgtacaacattt
tttcatcatgaatatccttggattctgagcgcctctgatgatcagaccatccgagtgtgg
aactggcagtctagaacctgtgtctgtgtgctaacggggcacaaccactatgtaatgtgt
gctcagttccacccctctgaagacctggtggtgtcagctagcctggaccagactgtccgc
gtttgggatatttctggtctaaggaagaaaaacttgtctcctggtgcagtggagtcggat
gtgagaggaataactggcgttgatctgtttggaactacagatgcagtggtaaagcatgtg
ctagagggtcatgaccgtggagtcaactgggctgccttccacccgactatgccccttatt
gtatctggggcagatgaccggcaagtgaagatctggcgtatgaatgaatcaaaggcatgg
gaggttgacacctgccggggccattacaacaatgtgtcttgtgctgtttttcatcctcgc
caagagttgatcctcagcaattctgaggacaagagtattcgagtctgggatatgtctaag
cggactggggttcagactttccgtcgggatcatgatcgcttctgggtcctagctgcccat
cctaaccttaacctctttgcagcaggccatgatggtgggatgattgtatttaagctggag
cgtgagcgtccagcctatgctgttcatggtaacatgctgcattatgtaaaggaccgattc
ctccgacagctggatttcaacagctccaaagatgtagctgtgatgcagttgcggagtggt
tctaagtttccagtgttcaatatgtcatacaatccagcagaaaatgcagtgctgctgtgc
accagagcaagcaatctagagaacagtacctacgatctgtacaccatccccaaagatgcc
gactcccagaatcctgatgcccctgaagggaaacgatcctcaggcctgacagcggtttgg
gttgctcggaatcggtttgctgtcctagatcgcatgcattcacttctgattaaaaacctg
aaaaatgagatcaccaagaaaatccaggtgcccaactgtgatgaaatcttctatgctggc
acaggcaacctccttcttcgggatgcagattccatcacactctttgacgtccagcagaag
cgaactctggcgtcagtgaagatttccaaggtgaaatatgttatctggtcggcagacatg
tcccatgtagcgttactggccaagcatgagcactcatgccctttgcctcttacagccatt
gtgatctgtaaccgcaagctggatgctctgtgtaacattcatgagaacattcgtgtcaag
agtggggcctgggatgaaagtggggtgtttatctataccacaagcaaccacatcaaatat
gctgtcaccactggggaccatgggattatccgaactctggatttacccatctatgtcaca
agagtgaagggcaataatgtatactgcctagacagggaatgtcgtcctcgggtccttacc
attgatcccactgagttcaaattcaaactggccctgatcaacaggaagtatgatgaggta
ctccacatggtgaggaatgctaagttagtgggccagtcaatcatcgcttatctccagaag
aagggctaccctgaagtggcgctgcactttgtaaaggatgagaaaactcgtttcagcctg
gccctggagtgtggaaacattgagattgctctagaggcagccaaagccctggatgacaag
aactgctgggagaagctgggagaagtggccctgctacagggcaatcaccagattgtagag
atgtgctatcagcgcaccaaaaactttgacaaactttccttcctgtaccttattaccggc
aacctggagaaacttcgcaagatgatgaagatcgctgagatccgaaaggacatgagtggc
cattatcagaatgccctgtacctaggtgatgtgtcagagagagtacgaatcctgaagaac
tgtgggcagaaatccctagcctacctcacagctgctacccatggcttagatgaggaagcc
gagagcctgaaggaaacatttgaccctgagaaggagacaatcccagacattgatcctaat
gccaagctgctccagccacctgcacctatcatgccactggatacaaactggcccttactg
accgtgtccaaagggttctttgaaggctccattgcaagcaaggggaagggaggagcattg
gctgctgacattgacatcgacactgtaggcactgaaggctggggagaggatgcagagctg
cagctggatgaagatgggtttgtggaggctccagaaggtttgggagaggatgctcttggc
aagggacaagaagaaggaggtggctgggatgtagaagaagatttggagctcccacctgag
ctggatgtaccctctggggtgtctggtagtgctgaagatgggttctttgtgcccccaacc
aagggagcaagcccaactcaaatctggtgcaataactcccagcttccagttgatcacatc
ctggctggttcttttgaaacagccatgaggcttctccatgatcaggtgggagttatccag
tttggcccctataagcaactgttcctacagacatatgcccgaggccgcaccacctatcaa
gcgctaccctgcttgccctccatgtatagttaccctaatcgcaattggaaggatgcaggg
ctaaagaatggtgtaccagctgtgggcctaaagcttaatgacctgatccaacgattgcag
ctgtgctatcagctcaccacggttggcaagtttgaggaagctgtggaaaaattccgttcc
atcctactcagtgtgcctcttcttgtcgtggacaataaacaggagattgcagaggcccag
caactcatcaccatttgccgtgaatacattgtgggtttgtgcatggagatagaaaggaag
aagctacctaaggagaccctagaccagcagaagcgcatctgtgagatggcagcctacttc
acacactcaaatctgcagcctgtgcatatgatcctggtgctgcggacagccctcaacctt
ttcttcaagctcaagaacttcaagacagctgccacctttgcccgacgcctgctggaactt
gggcccaagcctgaagtagcccaacagacaagaaaaatcttgtctgcctgtgagaaaaac
cccacagatgcctgccagctcaattatgacatgcacaacccctttgacatttgtgctgca
tcttaccggcccatctaccgtggaaaaccagtagagaagtgtccactcagtggggcctgc
tattcccctgagttcaagggacaaatctgcagggtcactacagtgacagagattggcaag
gatgtgattgggctgaggatcagtcctcttcagtttcgctaa
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integrated database retrieval system
