KEGG   Mus pahari (shrew mouse): 110321582
Entry
110321582         CDS       T05929                                 
Symbol
Copa
Name
(RefSeq) coatomer subunit alpha isoform X1
  KO
K05236  coatomer subunit alpha
Organism
mpah  Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mpah04131]
    110321582 (Copa)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:mpah04147]
    110321582 (Copa)
Membrane trafficking [BR:mpah04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    110321582 (Copa)
Exosome [BR:mpah04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   110321582 (Copa)
  Exosomal proteins of bladder cancer cells
   110321582 (Copa)
SSDB
Motif
Pfam: COPI_C B-prop_COPA_B_2nd Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd WDR55 Beta-prop_EML_2 TPR_COPA_B Beta-prop_WDR36-Utp21_1st EIF3I WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_WDR75_1st WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_1st WD40_MABP1-WDR62_2nd Beta-prop_WDR41 Beta-prop_SCAP Beta-prop_Aladin Beta-prop_SPT8 Beta-prop_IFT140_1st Beta-prop_RIG_2nd NBCH_WD40
Other DBs
NCBI-GeneID: 110321582
NCBI-ProteinID: XP_021053564
Ensembl: MGP_PahariEiJ_G0028122
LinkDB
Position
5:144643991..144686099
AA seq 1233 aa
MLTKFETKSARVKGLSFHPKRPWILTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRVW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVESD
VRGITGVDLFGTTDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNMLHYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDADSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEITKKIQVPNCDEIFYAGTGNLLLRDADSITLFDVQQK
RTLASVKISKVKYVIWSADMSHVALLAKHEHSCPLPLTAIVICNRKLDALCNIHENIRVK
SGAWDESGVFIYTTSNHIKYAVTTGDHGIIRTLDLPIYVTRVKGNNVYCLDRECRPRVLT
IDPTEFKFKLALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSL
ALECGNIEIALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITG
NLEKLRKMMKIAEIRKDMSGHYQNALYLGDVSERVRILKNCGQKSLAYLTAATHGLDEEA
ESLKETFDPEKETIPDIDPNAKLLQPPAPIMPLDTNWPLLTVSKGFFEGSIASKGKGGAL
AADIDIDTVGTEGWGEDAELQLDEDGFVEAPEGLGEDALGKGQEEGGGWDVEEDLELPPE
LDVPSGVSGSAEDGFFVPPTKGASPTQIWCNNSQLPVDHILAGSFETAMRLLHDQVGVIQ
FGPYKQLFLQTYARGRTTYQALPCLPSMYSYPNRNWKDAGLKNGVPAVGLKLNDLIQRLQ
LCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLCMEIERK
KLPKETLDQQKRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFKTAATFARRLLEL
GPKPEVAQQTRKILSACEKNPTDACQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGAC
YSPEFKGQICRVTTVTEIGKDVIGLRISPLQFR
NT seq 3702 nt   +upstreamnt  +downstreamnt
atgctaaccaaattcgagacgaagagcgcgcgggtcaaaggccttagttttcatcccaaa
agaccctggatcctgaccagtttacacaatggggtcatccagttatgggactatcgaatg
tgcaccctaattgacaaatttgatgaacatgatggtccagtgcgtggcattgacttccat
aagcagcagccactgttcgtctctggaggcgatgactataagattaaggtttggaattac
aaacttcggcgctgcctgttcacattgcttgggcacttggattatatccgtacaacattt
tttcatcatgaatatccttggattctgagcgcctctgatgatcagaccatccgagtgtgg
aactggcagtctagaacctgtgtctgtgtgctaacggggcacaaccactatgtaatgtgt
gctcagttccacccctctgaagacctggtggtgtcagctagcctggaccagactgtccgc
gtttgggatatttctggtctaaggaagaaaaacttgtctcctggtgcagtggagtcggat
gtgagaggaataactggcgttgatctgtttggaactacagatgcagtggtaaagcatgtg
ctagagggtcatgaccgtggagtcaactgggctgccttccacccgactatgccccttatt
gtatctggggcagatgaccggcaagtgaagatctggcgtatgaatgaatcaaaggcatgg
gaggttgacacctgccggggccattacaacaatgtgtcttgtgctgtttttcatcctcgc
caagagttgatcctcagcaattctgaggacaagagtattcgagtctgggatatgtctaag
cggactggggttcagactttccgtcgggatcatgatcgcttctgggtcctagctgcccat
cctaaccttaacctctttgcagcaggccatgatggtgggatgattgtatttaagctggag
cgtgagcgtccagcctatgctgttcatggtaacatgctgcattatgtaaaggaccgattc
ctccgacagctggatttcaacagctccaaagatgtagctgtgatgcagttgcggagtggt
tctaagtttccagtgttcaatatgtcatacaatccagcagaaaatgcagtgctgctgtgc
accagagcaagcaatctagagaacagtacctacgatctgtacaccatccccaaagatgcc
gactcccagaatcctgatgcccctgaagggaaacgatcctcaggcctgacagcggtttgg
gttgctcggaatcggtttgctgtcctagatcgcatgcattcacttctgattaaaaacctg
aaaaatgagatcaccaagaaaatccaggtgcccaactgtgatgaaatcttctatgctggc
acaggcaacctccttcttcgggatgcagattccatcacactctttgacgtccagcagaag
cgaactctggcgtcagtgaagatttccaaggtgaaatatgttatctggtcggcagacatg
tcccatgtagcgttactggccaagcatgagcactcatgccctttgcctcttacagccatt
gtgatctgtaaccgcaagctggatgctctgtgtaacattcatgagaacattcgtgtcaag
agtggggcctgggatgaaagtggggtgtttatctataccacaagcaaccacatcaaatat
gctgtcaccactggggaccatgggattatccgaactctggatttacccatctatgtcaca
agagtgaagggcaataatgtatactgcctagacagggaatgtcgtcctcgggtccttacc
attgatcccactgagttcaaattcaaactggccctgatcaacaggaagtatgatgaggta
ctccacatggtgaggaatgctaagttagtgggccagtcaatcatcgcttatctccagaag
aagggctaccctgaagtggcgctgcactttgtaaaggatgagaaaactcgtttcagcctg
gccctggagtgtggaaacattgagattgctctagaggcagccaaagccctggatgacaag
aactgctgggagaagctgggagaagtggccctgctacagggcaatcaccagattgtagag
atgtgctatcagcgcaccaaaaactttgacaaactttccttcctgtaccttattaccggc
aacctggagaaacttcgcaagatgatgaagatcgctgagatccgaaaggacatgagtggc
cattatcagaatgccctgtacctaggtgatgtgtcagagagagtacgaatcctgaagaac
tgtgggcagaaatccctagcctacctcacagctgctacccatggcttagatgaggaagcc
gagagcctgaaggaaacatttgaccctgagaaggagacaatcccagacattgatcctaat
gccaagctgctccagccacctgcacctatcatgccactggatacaaactggcccttactg
accgtgtccaaagggttctttgaaggctccattgcaagcaaggggaagggaggagcattg
gctgctgacattgacatcgacactgtaggcactgaaggctggggagaggatgcagagctg
cagctggatgaagatgggtttgtggaggctccagaaggtttgggagaggatgctcttggc
aagggacaagaagaaggaggtggctgggatgtagaagaagatttggagctcccacctgag
ctggatgtaccctctggggtgtctggtagtgctgaagatgggttctttgtgcccccaacc
aagggagcaagcccaactcaaatctggtgcaataactcccagcttccagttgatcacatc
ctggctggttcttttgaaacagccatgaggcttctccatgatcaggtgggagttatccag
tttggcccctataagcaactgttcctacagacatatgcccgaggccgcaccacctatcaa
gcgctaccctgcttgccctccatgtatagttaccctaatcgcaattggaaggatgcaggg
ctaaagaatggtgtaccagctgtgggcctaaagcttaatgacctgatccaacgattgcag
ctgtgctatcagctcaccacggttggcaagtttgaggaagctgtggaaaaattccgttcc
atcctactcagtgtgcctcttcttgtcgtggacaataaacaggagattgcagaggcccag
caactcatcaccatttgccgtgaatacattgtgggtttgtgcatggagatagaaaggaag
aagctacctaaggagaccctagaccagcagaagcgcatctgtgagatggcagcctacttc
acacactcaaatctgcagcctgtgcatatgatcctggtgctgcggacagccctcaacctt
ttcttcaagctcaagaacttcaagacagctgccacctttgcccgacgcctgctggaactt
gggcccaagcctgaagtagcccaacagacaagaaaaatcttgtctgcctgtgagaaaaac
cccacagatgcctgccagctcaattatgacatgcacaacccctttgacatttgtgctgca
tcttaccggcccatctaccgtggaaaaccagtagagaagtgtccactcagtggggcctgc
tattcccctgagttcaagggacaaatctgcagggtcactacagtgacagagattggcaag
gatgtgattgggctgaggatcagtcctcttcagtttcgctaa

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