Mus pahari (shrew mouse): 110321693
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Entry
110321693 CDS
T05929
Symbol
Rc3h1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mpah03000
]
110321693 (Rc3h1)
04121 Ubiquitin system [BR:
mpah04121
]
110321693 (Rc3h1)
Transcription factors [BR:
mpah03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
110321693 (Rc3h1)
Ubiquitin system [BR:
mpah04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
110321693 (Rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
Prok-RING_4
zf-CCCH
zf-C3HC4_3
zf-C3HC4
zf-CCCH_UNK
zf-C3HC4_2
FYVE
zf_CCCH_4
zf-CCCH_4
Vesi_VP2
PaaA_PaaC
Baculo_IE-1
TPD52
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
110321693
NCBI-ProteinID:
XP_021053766
Ensembl:
MGP_PahariEiJ_G0027992
LinkDB
All DBs
Position
5:133779644..133840795
Genome browser
AA seq
1130 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQIPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAPILSDE
SAVDLSNRKPPALPNGIVSSGSTVTQLIPRGTDPSFDSSLKPVKLDHLSSSAPGSPPDLL
ESAPKSISALPVNPHPVPPRGPTDLPPMPVTKPIQMVPRGSQLYPAQQADVYYQDPRGSA
PAFETAPYQQGMYYTPPPCVSRFVRPPPSAPEPGPPYLDHYSPYLQDRVINSQYGTQPHQ
YPPMYPTHYDGRRVYPAQSYPREEMFRESPVPIDIPSAAVPSYVPESRERYQQVEGYYPV
APHPAQSRPSYPRDPPYSRLPPPQPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTL
PPAFHPEEFLDEDLKVAGKYKANDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMMN
IESKGMRDQRLDLQRRAVETSDDDLIPFGDRPTVSRFGAISRTSKTLYQGAGPMQAIAPQ
GAPTKSINISDYSAYGAHGGWGDSPYSPHANIPPQGHFIEREKMSMAEVASHGKPLLSAE
REQLRLELQQLNHQISQQTQLRGLEAVSNRLVLQREVNTLASQPQPPPLPPKWPGMISSE
QLSLELHQVEREIGKRTRELSMENQCSVDMKSKLGTSKQAENGQPEPQNKIPTEDLPLTF
SDVPNGSALTQENLSLLSNKTSSLNLSEDSEGGGDNSDGQRSGVVSNSAP
NT seq
3393 nt
NT seq
+upstream
nt +downstream
nt
atgccggtacaagctccacaatggacggatttcctttcctgcccaatttgcactcagact
ttcgacgaaacaattcgaaagcccatcagtttgggctgtggccatactgtctgcaaaatg
tgcctgaataaactccaccgtaaggcttgcccatttgaccagaccactatcaatacggac
attgagctccttcctgtgaactcagcattactgcaactagtgggtgctcagatccctgag
caacagcccattactttgtgtagtggggttgaagatacaaagcattatgaggaagccaag
aaatgtgtagaagaattagcattgtacctgaaaccactcagcagtgcaagaggtgtgggt
ctgaatagcactactcagagtgttctgagtcgcccaatgcagagaaaacttgtgactctg
gttcattgccagctagtggaagaagaaggcaggatccgtgctatgagggctgctcgatct
ttaggtgaacgcacagttacagagctcattctccagcaccagaatcctcagcaactctct
tctaatctctgggcagcagtcagagctaggggctgccagttccttggaccagcaatgcag
gaggaagctctgaagctggtcttgctggccttggaagatggttctgcattgtcgcgtaaa
gtgttagttctctttgtagtgcaaagactggagccacgttttcctcaggcctctaaaacc
agcattgggcatgttgttcagctcctctacagagcctcttgcttcaaggtcaccaaacgt
gatgaagactcttctttgatgcaactgaaagaagaatttaggacttatgaagctctgagg
cgagaacatgactcccagatagtgcaaattgctatggaagctggcttaaggattgcacca
gaccagtggtcctctttgctttatggggatcagtctcacaaatctcatatgcagtctatt
attgacaagttgcagacccctgcctcatttgcacagagtgttcaggagctaacaattgct
ctccagcggactggagacccagcgaatttgaaccgactaagaccccatttggagctacta
gcaaacattgaccctagtccagatgctcctcctccaacatgggaacagctagaaaatgga
ctggttgctgtacgtacagtagtacatggactggttgattatatccagaaccacagcaaa
aaaggagcagatcaacaacagcctccacagcatagcaaatacaaaacatacatgtgtcga
gatatgaaacaaaggggaggatgtcctcgtggtgccagctgtacgtttgcacattcacag
gaagaactggaaaaatttcgtaaaatgaacaaacgtctggttcccagaagacccctgagt
gcctctttgggtcaacttaatgaggtgggcctgccttcagcacctatactttccgatgaa
agtgcagtggacttgtccaacagaaaacctcctgcactcccaaatggaattgtatcatca
gggagcacagtgacacaactgattccacgtgggacagaccccagctttgattcttctctg
aaaccagtaaagctagaccacctgagcagcagtgctccgggttcccctcctgacctgctg
gaatctgcccctaagagtatttctgccttacctgtgaatccacatcctgtacctccaagg
ggaccaacagatctgcctcccatgcctgtcaccaaaccaattcagatggtacctcgaggt
tctcagctgtatccagcacaacaagcagatgtttattatcaggatcctcgaggaagtgcc
ccagcttttgagacagcaccttatcagcagggtatgtactatactccaccaccatgtgtg
tcccgctttgtccgacctccaccatctgctcctgaacctggtcctccatacttggatcat
tattcaccctacctccaagatcgtgtcataaactctcagtatggcacacagccacaccag
tacccacctatgtacccaactcactacgatggccgccgtgtataccctgctcagtcttat
ccaagagaggagatgttccgggaaagccctgtacccatcgacattccatctgcagcagtc
ccgtcctatgtacctgagtccagagagcgataccaacaagtagagggttactacccagtg
gctcctcatccagctcagagcagaccttcatatcccagggatcctccttatagtcggctt
cctcctccccaaccccatcctagtctggatgagttacatcgaaggcggaaggaaataatg
gcccagctagaggaaagaaaagtcatctctccacctccttttgcaccttcaccaacattg
cctcctgcattccatccagaggaatttttggatgaagacttgaaagtagctggaaaatac
aaagcaaatgattatagccaatattctccttggtcatgtgataccatcggctcctacatt
ggaaccaaagatgcaaaacccaaagatgttgtggcagcggggagtgtggaaatgatgaat
atagaaagtaaaggaatgagagaccagaggttggatcttcagagaagagcagtggaaact
agtgatgatgacctcatcccatttggagaccgaccaacagtatctcgatttggtgccatc
tctcgaacatccaaaacactgtatcagggtgctggcccaatgcaagctatagcacctcag
ggagcacccacaaaatctattaacatttccgattacagtgcatatggagctcatggtggc
tggggagattctccgtactcacctcatgcaaacatacctcctcagggacacttcattgag
agggagaaaatgtccatggcagaagtggccagtcatggaaaaccccttctatctgctgaa
agagaacaattacggctagaattgcagcagctgaaccatcagatcagccagcagacccag
ctacgaggactagaggctgttagtaaccggctggtgttacagagggaggtgaacaccttg
gcaagccagccacagccccctccgctgcctccaaaatggcctggaatgatctcaagtgag
cagctaagcttggaactgcatcaggtggaaagggaaattgggaagaggacccgggaattg
agtatggagaaccagtgttctgtggacatgaaaagcaaactgggtacaagcaagcaagca
gaaaatggtcagcctgagccacaaaacaagatccccactgaggaccttccattgacattt
agtgatgtaccaaatggatcagccttgacacaagagaatctcagcctcctatcaaacaag
accagctctttgaacctgtccgaagactctgagggaggaggcgataacagtgatggccag
agatcaggagttgtttccaattctgctccctag
DBGET
integrated database retrieval system
