Mus pahari (shrew mouse): 110322235
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Entry
110322235 CDS
T05929
Symbol
Optc
Name
(RefSeq) opticin isoform X1
KO
K08128
opticin
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
mpah00535
]
110322235 (Optc)
Proteoglycans [BR:
mpah00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class III
110322235 (Optc)
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Motif
Pfam:
LRR_8
LRR_4
LRR_1
LRRNT
LRR_9
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
110322235
NCBI-ProteinID:
XP_021054485
Ensembl:
MGP_PahariEiJ_G0027845
LinkDB
All DBs
Position
5:complement(108160906..108171235)
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AA seq
383 aa
AA seq
DB search
MRECLAVPWSDRQSSSPPEPLSPWKLLGQTEPKASKRMYIRGIQPFPLLPLPQNLMKFLA
FLSLLTLVLQEAGTASLLGEGEREERSPEEDDTYASLHVENHTLSIEDYSEVIDLSSYEE
LADYGDQIPEAKISSLTLPTRTSPTSTVAPRTLSPNLTTAGPTATGLLNSQSSHGLPTCL
VCVCLGSSVYCDDADLENIPPLPQMTTYLYARFNHISHIRAGDFKGLTKLRRIDLSGNSI
SSIHNDALRLLPALQDLILLENQLAALPVLPSGIEFLDVRLNRLQSSGIQPETFMALEQL
QFLYLADNLLDSIPGPLPLSLRSLHLQNNMIETMESDTFCDTGEHRHERQQLEDIRLDGN
PINLSLFPEAYFCLPRLPVGRFT
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgagggagtgtctagctgttccctggtctgacaggcagtcatcgtctccaccagagcct
ttatctccttggaagctgcttggccagacggaaccaaaagcatctaaaaggatgtacatc
agagggattcagccattcccactcctacccctccctcagaacctcatgaagttcctggct
ttcctgagtctgttgaccctggtgctgcaggaggcagggacagcttctctcctaggagag
ggagaaagagaagagcggagccctgaggaagatgacacttatgcgtccctgcatgtggag
aaccataccctgagcatagaggactacagcgaagtcattgatctgagcagctatgaggaa
cttgcagactatggggaccagatccctgaggctaaaataagcagtctgactcttccaaca
agaactagtcccactagcactgtggctccaaggacattgtcaccaaacctcacgacggct
ggacctaccgccactggcctactgaactcccagagcagtcatggcctgcctacctgcctg
gtctgtgtgtgcctgggctcttctgtgtactgtgatgatgcagacctggagaacatccct
cctcttccccagatgaccacctacctgtatgctcgcttcaatcacatcagccacatccgg
gctggagacttcaaaggactgacaaaactgagaaggatcgacctctctggcaactccatc
tcctccatccacaacgatgccctccgcctgctgcctgccctgcaggatctgatccttcta
gagaaccagctggcagccctgcctgtgctgcccagtggcatcgagttcctggacgtccgc
ctgaatcggctgcagagctctgggatacagcctgagaccttcatggcgctggagcagttg
cagtttctctacctggccgacaacctgctggattccatccccgggcctttgcccctcagc
ctgcgctccctgcacctgcagaataacatgatcgagaccatggaaagcgacaccttctgt
gacaccggggaacacagacatgagcgccagcagctggaagacatccgcctggatgggaac
cccatcaacctgagccttttcccagaggcctatttttgcctgccacggctccctgtgggc
cgcttcacctag
DBGET
integrated database retrieval system
