Mus pahari (shrew mouse): 110323001
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Entry
110323001 CDS
T05929
Symbol
Ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03013
Nucleocytoplasmic transport
mpah05014
Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110323001 (Ndc1)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
110323001 (Ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110323001 (Ndc1)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
110323001 (Ndc1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ndc1_Nup
Pilin_N
ARM_At3g06530
DUF5134
Motif
Other DBs
NCBI-GeneID:
110323001
NCBI-ProteinID:
XP_021055668
Ensembl:
MGP_PahariEiJ_G0028585
LinkDB
All DBs
Position
6:58203152..58252411
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AA seq
673 aa
AA seq
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MATAASGPCAGGSPRDILWRVLGWRIVTSIIWSVLLLPVCITAFIVLSSIDLFHPIQWLS
DSCSDFYSSQVIFHLLLLAVVVIIISIFNVEFYTVVPSIPGSRLALIARILHPQQLTHSF
IHAAMGMAVAWCAAIMTKGQYSSLVVPCTGTESLDSRAAQTCVNEYHLFFLLSGAFMGYS
YSLLYFINNMNYLPFPIIQQYKFLRFRRSFLLLVKHSCVESLFMVRNFCIVYYFFGHIPK
AWISTALDLHTDEQAHRPLDTIGGLLNVSLLYHVWLCGVFLLMTWYISWMLFKIYATEAY
VFPVQPPFAEESDECLPKVLNSNPPRIVKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHP
HNWTAISRECLNLLNAMTQKLVLYQEAAATNGRMCSSYSVEPKTLSSAEEAAFQTPKPSQ
MPSVPPLVKTSLFSPKFSTPDVSSPFGTPFGSSVVNRMAGIFDVNPCCGSPQSPQLIRRG
PRLWTHTSDQQVSTISRPSPCTSVTAEGKTVRQPSVIYSWIQNKREQIKNFLSKRVLIMY
FFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQEA
VDKYFKLPHASSKPPRTSGSLVDTSYKTLRFAFRASLKTAIYRVTTTFGEHLNAVQASAE
HQKRLQQFLEFKE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggccacggctgcgagcgggccctgcgccggcgggtcgccgcgggacatcctttggcgc
gttttgggttggaggatagttaccagcattatttggtcagtgctgcttctacccgtctgc
atcacagcctttatagtcttaagcagcatcgatttattccaccctatacagtggctgtca
gattcttgcagtgacttctatagttcccaagtaatctttcacctcctgctgctggccgtg
gtcgttataataataagtattttcaatgtggaattctatacagtcgtgccctccataccc
ggctcccgactggccctgatagcgcggatccttcatccccagcagctcacacactccttc
atacacgccgcgatgggaatggctgtggcttggtgtgcggccatcatgaccaagggccag
tacagctctctcgtggttccctgcactggaactgagagcttagatagccgtgctgctcag
acctgcgtgaatgaatatcatctgtttttcctactgtctggagcattcatgggctatagc
tatagtcttctgtatttcattaacaacatgaattatcttccgtttcctattatacagcag
tacaaatttttgcgtttccggagatctttcctcttactagttaaacatagctgtgtggaa
tccctgttcatggtcagaaatttctgcattgtgtattatttttttggccatattcccaaa
gcgtggattagcactgctctggaccttcacacagatgagcaagctcacagacctcttgac
acgataggtggcctcctgaacgtctcattactctaccatgtctggctgtgtggtgtcttc
ctcttgatgacttggtatatctcatggatgctcttcaaaatctatgccaccgaggcgtat
gtgttccctgttcagccaccttttgcagaagaatcagatgaatgccttcctaaagtccta
aacagcaatcccccacgcattgtaaagtatctggccttgcaggatctgatgctgctttct
cagtattctccttcccggaggcaagaagttttcagcctcagccaaccaggtggacatccc
cacaattggactgctatttcgagggagtgtttgaatcttttaaatgctatgactcagaaa
ctggttctctaccaagaagctgctgctacaaatgggagaatgtgctcatcatactcagtg
gaacccaagacactgagctctgcagaagaagctgcttttcagactccaaaacctagccag
atgccttccgtgccgccattagttaaaacgtcactgttttctccaaaattttctacaccc
gatgtttcaagtccttttgggaccccgtttggctccagtgtagtgaaccgaatggctgga
atttttgatgtaaacccctgctgtgggtctccccaaagtcctcagcttataagaagagga
ccaaggctgtggactcacacttctgatcagcaagtgtctacaatttctcgtccatctcct
tgtacctccgttactgctgagggtaagacagtgagacagcccagtgtgatctactcatgg
attcagaataaacgtgaacagattaagaatttcttgtcaaaacgggtgctgataatgtac
tttttcagtaagcacccagaggcctccattcaagctgttttttcagatgcccaaatgcat
atttgggctttagaaggtctgtctcacttagtagcagcatcatttacagaagatagattt
ggagttgtccagaccacactcccagctatccttaatactttgttgactctgcaggaggct
gtcgacaagtacttcaagctgcctcacgcttctagtaaaccaccccgaacttcaggaagc
cttgtggacacgtcctacaaaacattaagatttgctttcagggcctcactgaaaactgct
atctaccgtgtaaccaccacgtttggtgaacatctgaacgctgtgcaggcatctgcagaa
catcagaaaagacttcagcagttcttggagttcaaagaatag
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integrated database retrieval system