KEGG   Mus pahari (shrew mouse): 110323001
Entry
110323001         CDS       T05929                                 
Symbol
Ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
  KO
K14315  nucleoporin NDC1
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah03013  Nucleocytoplasmic transport
mpah05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    110323001 (Ndc1)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    110323001 (Ndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mpah03019]
    110323001 (Ndc1)
Messenger RNA biogenesis [BR:mpah03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     110323001 (Ndc1)
SSDB
Motif
Pfam: Ndc1_Nup Pilin_N ARM_At3g06530 DUF5134
Other DBs
NCBI-GeneID: 110323001
NCBI-ProteinID: XP_021055668
Ensembl: MGP_PahariEiJ_G0028585
LinkDB
Position
6:58203152..58252411
AA seq 673 aa
MATAASGPCAGGSPRDILWRVLGWRIVTSIIWSVLLLPVCITAFIVLSSIDLFHPIQWLS
DSCSDFYSSQVIFHLLLLAVVVIIISIFNVEFYTVVPSIPGSRLALIARILHPQQLTHSF
IHAAMGMAVAWCAAIMTKGQYSSLVVPCTGTESLDSRAAQTCVNEYHLFFLLSGAFMGYS
YSLLYFINNMNYLPFPIIQQYKFLRFRRSFLLLVKHSCVESLFMVRNFCIVYYFFGHIPK
AWISTALDLHTDEQAHRPLDTIGGLLNVSLLYHVWLCGVFLLMTWYISWMLFKIYATEAY
VFPVQPPFAEESDECLPKVLNSNPPRIVKYLALQDLMLLSQYSPSRRQEVFSLSQPGGHP
HNWTAISRECLNLLNAMTQKLVLYQEAAATNGRMCSSYSVEPKTLSSAEEAAFQTPKPSQ
MPSVPPLVKTSLFSPKFSTPDVSSPFGTPFGSSVVNRMAGIFDVNPCCGSPQSPQLIRRG
PRLWTHTSDQQVSTISRPSPCTSVTAEGKTVRQPSVIYSWIQNKREQIKNFLSKRVLIMY
FFSKHPEASIQAVFSDAQMHIWALEGLSHLVAASFTEDRFGVVQTTLPAILNTLLTLQEA
VDKYFKLPHASSKPPRTSGSLVDTSYKTLRFAFRASLKTAIYRVTTTFGEHLNAVQASAE
HQKRLQQFLEFKE
NT seq 2022 nt   +upstreamnt  +downstreamnt
atggccacggctgcgagcgggccctgcgccggcgggtcgccgcgggacatcctttggcgc
gttttgggttggaggatagttaccagcattatttggtcagtgctgcttctacccgtctgc
atcacagcctttatagtcttaagcagcatcgatttattccaccctatacagtggctgtca
gattcttgcagtgacttctatagttcccaagtaatctttcacctcctgctgctggccgtg
gtcgttataataataagtattttcaatgtggaattctatacagtcgtgccctccataccc
ggctcccgactggccctgatagcgcggatccttcatccccagcagctcacacactccttc
atacacgccgcgatgggaatggctgtggcttggtgtgcggccatcatgaccaagggccag
tacagctctctcgtggttccctgcactggaactgagagcttagatagccgtgctgctcag
acctgcgtgaatgaatatcatctgtttttcctactgtctggagcattcatgggctatagc
tatagtcttctgtatttcattaacaacatgaattatcttccgtttcctattatacagcag
tacaaatttttgcgtttccggagatctttcctcttactagttaaacatagctgtgtggaa
tccctgttcatggtcagaaatttctgcattgtgtattatttttttggccatattcccaaa
gcgtggattagcactgctctggaccttcacacagatgagcaagctcacagacctcttgac
acgataggtggcctcctgaacgtctcattactctaccatgtctggctgtgtggtgtcttc
ctcttgatgacttggtatatctcatggatgctcttcaaaatctatgccaccgaggcgtat
gtgttccctgttcagccaccttttgcagaagaatcagatgaatgccttcctaaagtccta
aacagcaatcccccacgcattgtaaagtatctggccttgcaggatctgatgctgctttct
cagtattctccttcccggaggcaagaagttttcagcctcagccaaccaggtggacatccc
cacaattggactgctatttcgagggagtgtttgaatcttttaaatgctatgactcagaaa
ctggttctctaccaagaagctgctgctacaaatgggagaatgtgctcatcatactcagtg
gaacccaagacactgagctctgcagaagaagctgcttttcagactccaaaacctagccag
atgccttccgtgccgccattagttaaaacgtcactgttttctccaaaattttctacaccc
gatgtttcaagtccttttgggaccccgtttggctccagtgtagtgaaccgaatggctgga
atttttgatgtaaacccctgctgtgggtctccccaaagtcctcagcttataagaagagga
ccaaggctgtggactcacacttctgatcagcaagtgtctacaatttctcgtccatctcct
tgtacctccgttactgctgagggtaagacagtgagacagcccagtgtgatctactcatgg
attcagaataaacgtgaacagattaagaatttcttgtcaaaacgggtgctgataatgtac
tttttcagtaagcacccagaggcctccattcaagctgttttttcagatgcccaaatgcat
atttgggctttagaaggtctgtctcacttagtagcagcatcatttacagaagatagattt
ggagttgtccagaccacactcccagctatccttaatactttgttgactctgcaggaggct
gtcgacaagtacttcaagctgcctcacgcttctagtaaaccaccccgaacttcaggaagc
cttgtggacacgtcctacaaaacattaagatttgctttcagggcctcactgaaaactgct
atctaccgtgtaaccaccacgtttggtgaacatctgaacgctgtgcaggcatctgcagaa
catcagaaaagacttcagcagttcttggagttcaaagaatag

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