KEGG   Mus pahari (shrew mouse): 110323089
Entry
110323089         CDS       T05929                                 
Symbol
Snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
mpah  Mus pahari (shrew mouse)
Pathway
mpah03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mpah00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    110323089 (Snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mpah03041]
    110323089 (Snrnp40)
Spliceosome [BR:mpah03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    110323089 (Snrnp40)
 Complex C
   U5 SnRNP specific factors
    110323089 (Snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_TEP1_2nd WD40_CDC20-Fz WD40_WDHD1_1st EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_Vps41 eIF2A Beta-prop_WDR35_TULP_N Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_RIG_1st Cytochrom_D1 WD40_like WDR54 Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 110323089
NCBI-ProteinID: XP_021055819
Ensembl: MGP_PahariEiJ_G0028879
LinkDB
Position
6:81399885..81430453
AA seq 358 aa
MIEQQKRKGPELPLVPVKRPRHELLLGAAGAGPGAGPQQATPGALLQAGPPRCSSLQAPI
MLLSGHEGEVYCCKFHPNGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNT
DGSMLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLW
DIRKKAAVQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVT
GLSLSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSK
IAAGSADRFVYVWDTTSRRVLYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgatcgagcagcagaagcgtaagggtccggagctacccctggttcccgtcaagcggccg
cgacatgagttgttgttgggagcggcaggagccggccccggagccgggccgcagcaggcg
actccgggggcattgctgcaggcgggaccgccaaggtgttcttcccttcaagctccaatc
atgctgctctcaggacacgaaggagaagtgtactgctgcaaatttcaccccaatggatcc
accctggcttctgctggatttgaccggctaatactgttgtggaatgtctatggagactgt
gataactatgctacgttgaagggacacagtggagcagtgatggagctgcactataacaca
gatggcagcatgctcttctcagcgtcaacagacaaaactgtggcggtgtgggatagtgaa
acaggggagagagtgaaaaggctaaaagggcatacttcctttgtgaactcctgttacccc
gccagaaggggcccccaacttgtctgcactggcagtgacgacggtacagttaagctttgg
gacatccggaagaaagcagctgtccagacatttcagaacacgtaccaggtgttagctgtg
accttcaatgacacgagcgatcagattatctctggcggaatagacaatgatatcaaggtc
tgggacctacgccaaaacaagttaacctacaccatgagaggccatgcagactctgtaact
ggcttgagcttgagttctgaaggatcttatctcttgtccaatgcaatggacaacacagtt
cgtgtctgggatgtccggccatttgctcccaaagagagatgtgtgaagatatttcaagga
aatgtccacaactttgaaaagaacctcctgagatgttcctggtcaccagatggaagcaag
atagcagctggctcagcagacaggtttgtgtatgtgtgggacaccacgagccgaagggtc
ctgtataagctgcctggtcatgctggctccatcaatgaagtggccttccaccccgatgag
cccatcatcctctcagcatccagtgacaagaggctctacatgggtgaaatccagtga

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