Mus pahari (shrew mouse): 110323695
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Entry
110323695 CDS
T05929
Symbol
Abca1
Name
(RefSeq) ATP-binding cassette sub-family A member 1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah02010
ABC transporters
mpah04148
Efferocytosis
mpah04975
Fat digestion and absorption
mpah04979
Cholesterol metabolism
mpah05417
Lipid and atherosclerosis
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
110323695 (Abca1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
110323695 (Abca1)
09150 Organismal Systems
09154 Digestive system
04975 Fat digestion and absorption
110323695 (Abca1)
04979 Cholesterol metabolism
110323695 (Abca1)
09160 Human Diseases
09166 Cardiovascular disease
05417 Lipid and atherosclerosis
110323695 (Abca1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
mpah02000
]
110323695 (Abca1)
Transporters [BR:
mpah02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
110323695 (Abca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
110323695
NCBI-ProteinID:
XP_021056703
Ensembl:
MGP_PahariEiJ_G0028363
LinkDB
All DBs
Position
6:complement(7149207..7269191)
Genome browser
AA seq
2261 aa
AA seq
DB search
MACWSQLRLLLWKNLTFRRRQTCQLFLEVAWPLFIFLILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGEAPGVVGNFNKSIVSRLFSDAQRLLLYSQKDT
SIKDMHKVLRMLRQIKHPNSNLKLQDFLVDNETFSGFLQHNLSLPRSTVDSLLQANVGLQ
KVFLQGYQLHLASLCNGSKFEDIIQLGDAEVSALCGLPRRKLDAAERVLRYNMDILKPVV
TKLNSTSHLPTQHLAEATTVLLDSLGDLAQELFSTKSWSDMRQEVMFLTNVNSSSSSTQI
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNNTEEDMETFYDNSTTPYCNDLMK
NLESSPLSRIIWKALKPLLVGKILYTPDTPATRQVMAEVNKTFQELAVFHDLQGMWEELS
PQIWTFMENSQEMDLVRTLLDSRGNDQFWEQKLDGLDWTAQDIMAFLAKNPEDVQSPNGS
VYTWREAFNETNQAIQTISRFMECVNLNKLEPIPTEVRLINKSMELLDERKFWAGIVFTG
ITPDSAELPHHVKYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDMRYVWGGFAYLQDVV
EQAIIRVLTGTEKKTGVYMQQMPYPCYVDDIFLRVMSRSMPLFMTLAWIYSVAVIIKGIV
YEKEARLKETMRIMGLDNGILWFSWFVSSLIPLLVSAGLLVVILKLGNLLPYSDPSVVFV
FLSVFAVVTILQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFSIKIFVS
LLSPVAFGFGCEYFALFEEQGIGVQWDNLFESPVEEDGFNLTTAVSMMLFDTFLYGVMTW
YIEAVFPGQYGIPRPWYFPCTKSYWFGEEIDEKSHPGSSQKGVSEICMEEEPTHLRLGVS
IQNLVKVYRDGMKVAVDGLALNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSGTAYIL
GKDIRSEMSSIRQNLGVCPQHNVLFDMLTVEEHIWFYARLKGLSEKHVKAEMEQMALDVG
LPPSKLKSKTSQLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYSRRGIWELLLKYRQ
GRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESSLS
SCRNSSSTVSCLKKEDSVSQSSSDAGLGSDHESDTLTIDVSAISNLIRKHVSEARLVEDI
GHELTYVLPYEAAKEGAFVELFHEIDDRLSDLGISSYGISETTLEEIFLKVAEESGVDAE
TSDGTLPARRNRRAFGDKQSCLHPFTEDDAIDPNDSDIDPESRETDLLSGMDGKGSYQLK
GWKLTQQQFVALLWKRLLIARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYPSLELQ
PWMYNEQYTFVSNDAPEDMGTQELLNALTKDPGFGTRCMEGNPIPDTPCLAGEEDWTISP
VPQSIVDLFQNGNWTMKNPSPACQCSSDKIKKMLPVCPPGAGGLPPPQRKQKTADILQNL
TGRNISDYLVKTYVQIIAKSLKNKIWVNEFRYGGFSLGVSNSQALPPSQEVNDAIKQMKK
LLKLAKDSSADRFLSSLGRFMAGLDTKNNVKVWFNNKGWHAISSFLNVINNAILRANLQK
GENPSQYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQER
VSKAKHLQFISGVKPVIYWLSNFVWDMCNYVVPATLVIIIFICFQQKSYVSSTNLPVLAL
LLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKFNDIN
DILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPLSWDLVGRNLFAMAVEG
VVFFLITVLIQYRFFIRPRPVKAKLPPLNDEDEDVRRERQRILDGGGQNDILEIKELTKI
YRRKRKPAVDRICIGIPPGECFGLLGVNGAGKSTTFKMLTGDSPVTRGDAFLNKNSILSN
IHEVHQNMGYCPQFDAITELLTGREHVEFFALLRGVPEKEVGKVGEWAIRKLGLVKYGEK
YASNYSGGNKRKLSTAMALIGGPPVVFLDEPTTGMDPKARRFLWNCALSIVKEGRSVVLT
SHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVRIAGSNPDLKPVQEFFG
LAFPGSVLKEKHRNMLQYQLPSSLSSLARIFSILSQSKKRLHIEDYSVSQTTLDQVFVNF
AKDQSDDDHLKDLSLHKNQTVVDVAVLTSFLQDEKVKESYV
NT seq
6786 nt
NT seq
+upstream
nt +downstream
nt
atggcttgttggtctcagttaaggctgctgctgtggaagaatctgacctttcgaaggaga
caaacatgtcagctgttcctggaggtggcctggcctctctttatcttcctgatcttgata
tctgtccgcctgagctacccaccctacgaacagcacgagtgccactttccgaataaagcc
atgccgtctgcaggaaccctcccctgggtacaggggattatctgtaatgccaacaacccc
tgcttccgttatccaactcccggcgaggctcctggtgttgttggaaactttaacaagtcc
attgtgtctcgcctgttctcagatgcccagaggcttcttctgtatagccaaaaagacacc
agcattaaggacatgcacaaggtcctgagaatgttacggcagatcaagcatcccaactca
aatttgaagctccaggatttcctggtggacaatgaaacattctctggattcctgcagcac
aatttgtcccttccaagatctactgtggacagcctgctgcaggcgaatgttggcctccag
aaggtatttttgcaaggctaccagttacacttggccagtctgtgtaatggatcaaaattc
gaagacatcattcagcttggtgatgcggaagtctctgccctctgtggtctaccgaggagg
aagctcgatgcagccgagagagtgctgcgctacaacatggacatcctgaagccagttgtg
acaaaactaaactccacatctcatctcccgacccagcatctggccgaagccaccacagtg
ttgcttgacagcttgggggacctggcccaagagctgttcagcacaaagagctggagcgac
atgcggcaggaggtgatgtttctgaccaacgtgaacagctccagctcctccacccagata
taccaggctgtgtcccgcattgtgtgtggtcacccagaaggcgggggcctgaagatcaag
tccctcaactggtacgaggataacaactacaaagccctctttggagggaataacaccgag
gaagacatggagaccttctatgacaattctacaactccttattgcaatgatttgatgaag
aacttggagtctagtcctctttctcgaattatttggaaggcactcaagccactgcttgtt
ggaaagattctctatacacctgacacaccagctacaaggcaggtcatggctgaggtgaac
aagacttttcaggagttggctgtgttccatgacctgcagggcatgtgggaagaactcagc
ccccaaatttggaccttcatggagaacagccaggagatggaccttgtccggacactgtta
gacagcagaggcaatgaccagttttgggaacagaagttggatggattagattggactgcc
caagacatcatggcgtttctggccaagaacccagaggatgttcagtctccaaatggctct
gtgtatacatggagagaagctttcaatgagaccaaccaggcaatccagacaatatctcga
ttcatggagtgtgtcaacctgaacaagctggagcccattccgacagaagtcaggctcatc
aacaagtccatggagctgctggatgagaggaagttctgggctggcatcgtgttcacaggc
atcactccggacagtgcggagctgccccatcatgtaaagtacaagatccggatggacatt
gacaacgttgagagaactaataagatcaaggatgggtactgggacccgggtcctcgggct
gacccttttgaagatatgcgctatgtctggggcggcttcgcctacttgcaggatgtggtg
gaacaggcgatcatcagagtgctgacgggaactgagaagaaaacgggtgtctatatgcaa
cagatgccctacccctgttatgttgatgacatttttctgcgggtcatgagccgatcaatg
cccctctttatgactctggcctggatctactctgtggctgtgatcatcaagggcattgtc
tatgagaaggaggctcggttgaaggagaccatgcgcatcatgggcctggacaatggcatc
ctctggtttagctggtttgttagcagcctcatccctctgcttgtgagtgctggcctgctg
gtggtcattttgaagttaggaaacctgctgccctatagtgaccccagcgtggtgttcgtc
ttcctgtctgtgtttgccgtggtgaccatcctacagtgcttcctcattagcactctcttc
tcccgtgccaacctggcagcagcctgtgggggcatcatctacttcacgctgtacctgccc
tatgtgctatgtgtagcctggcaggactatgtgggcttctccatcaagatctttgttagc
ctgctgtctcctgtggcttttggatttggctgtgagtattttgcccttttcgaggagcaa
ggtatcggggtccaatgggacaatctcttcgagagcccggtggaggaggatggcttcaat
ctcaccactgcagtgtccatgatgctctttgacacctttctctatggcgtgatgacatgg
tacatcgaagccgtctttccagggcagtatggaattcccaggccctggtattttccttgt
accaagtcctactggtttggtgaggaaattgatgagaagagccaccctggttccagccag
aaaggagtgtcagaaatctgcatggaagaggaacccacacatctgaggctgggggtgtcc
attcagaacctggtgaaggtttaccgagatggcatgaaggttgctgtggatggcttggcg
ctcaatttttacgaaggccagattacctccttcctgggccacaatggagcaggaaagacc
accaccatgtcaatactgactgggctatttcccccaacttctggcactgcctacatcctg
gggaaggacattcgctcagagatgagctccatccggcagaacctgggagtctgtccccag
cataatgtgctgtttgacatgctgactgtcgaagagcacatctggttctatgcccgccta
aaagggctctcagagaagcatgtgaaagcagagatggagcagatggccctggatgttggc
ttaccccccagcaagctgaagagcaaaacgagtcagctctcaggtggtatgcagagaaag
ctgtctgtggccctggccttcgtgggtggatccaaggttgtcattctggatgagcccaca
gccggggtggacccgtactctcgcaggggaatatgggaactcctgctgaaataccggcaa
ggccgcaccattattttgtctacacaccatatggacgaagctgacatccttggggacaga
attgccatcatttcccatgggaagctgtgttgtgtgggctcctccctgtttttgaaaaac
cagttgggaacgggttactatctgaccctggtcaagaaagatgtggaatcgtccctcagt
tcctgcagaaacagtagcagcaccgtgtcttgtctgaaaaaggaggacagtgtttctcag
agcagttctgatgctggcctgggcagcgaccatgaaagtgacacgctgaccatcgatgtc
tctgctatctccaacctcatcaggaagcacgtgtctgaagcccggctggtagaggacatt
gggcacgaactgacctatgtgctgccctatgaagccgcgaaggagggagcctttgtggaa
ctcttccacgagattgatgaccgcctctcagacctgggcatctccagttatggcatctcg
gagaccaccctcgaagaaatattcctcaaagtggctgaagagagcggggtggatgctgag
acctcagatggtactttgccagcaagacgaaacagacgggccttcggggacaagcagagc
tgtctgcacccatttacggaagacgatgctattgatcccaatgactctgacatagaccca
gaatccagggagacggacctgctcagtgggatggacggcaaaggctcctaccagctgaag
ggctggaagctcacccagcaacagtttgtggcccttttgtggaagaggctgctgattgcc
aggcggagccggaaggggttcttcgctcagattgtcctgccagctgtctttgtttgcatt
gccctggtcttcagcctgattgtgccaccctttggcaagtaccccagcctggaacttcag
ccctggatgtataacgagcagtatacatttgtcagtaatgatgctccggaggacatgggc
acccaggaactcttgaatgctctgaccaaagatccaggcttcgggacccgctgtatggaa
ggaaacccaatcccagacaccccttgcttggccggggaggaggactggaccatcagccca
gttccccagagcatcgtagacctcttccagaatgggaactggacgatgaagaacccctca
cctgcatgccagtgtagcagtgacaaaatcaagaagatgctgcctgtgtgtccgccaggg
gcaggggggctgccgcctcctcagagaaaacagaaaactgcagacatccttcagaatctg
acgggaagaaatatttcagattacctggtgaagacatacgtgcagatcatagcaaaaagc
ttaaagaataagatctgggtgaatgagtttcggtatggcgggttttccctgggtgtcagc
aattctcaagcacttcctccgagccaagaagttaatgatgctatcaagcaaatgaagaaa
ctcctgaagctggccaaggacagctctgcagatcgcttcctcagcagcctaggaaggttc
atggcaggactggataccaaaaacaatgtcaaggtgtggttcaataacaagggctggcat
gctatcagttcgttcctgaatgtcatcaacaatgccattctccgggccaacctacagaag
ggagagaacccaagccagtatgggatcactgctttcaaccatcccttgaacctcactaaa
cagcagctctcagaggtggctctgatgaccacctctgtcgacgtcctcgtgtctatctgt
gtcatctttgcgatgtcctttgtcccagccagctttgttgtgttcctgatccaggagcgt
gtgagcaaagccaagcaccttcagtttatcagcggcgtgaagcccgtcatctactggctg
tccaattttgtctgggatatgtgcaattatgtggtccctgctacactggtcattatcatc
ttcatctgcttccagcagaagtcctatgtgtcctccaccaacctgcccgttctagccctt
ctgctcttgctgtatgggtggtcaatcacacctctcatgtacccagcgtcctttgtgttc
aagatccccagcactgcctatgtggttctcaccagtgtgaacctcttcatcggcatcaat
ggcagtgtggccactttcgtactggagctctttacaaacaataagttcaatgacatcaat
gacatcctgaagtctgtgtttcttatcttcccacacttctgcctggggcgaggactcatc
gacatggtgaagaaccaggcgatggccgatgccctggagaggtttggggagaaccgcttc
gtctctccactctcttgggacttggtaggacggaacctttttgccatggccgtggaaggg
gtggtgttcttcctcatcactgttctgatccagtacagatttttcatcaggcccagacct
gtaaaggcgaagcttcctcctttgaatgatgaggacgaggatgtgaggcgggagagacag
aggatcctggatggcggaggacagaatgacatcctagagatcaaggaactgaccaagatc
tataggcggaagcggaagcctgcagtcgacaggatctgcatcggtattccccccggagag
tgctttggactcctgggagttaacggagctgggaagtcaacaactttcaagatgctgact
ggagatagccctgtgaccagaggggatgctttccttaacaaaaacagcatcttatcaaat
atccatgaagtccatcagaacatgggctactgccctcagttcgatgccatcacagagctg
ctgactggaagagagcatgtggagttctttgccctcttgaggggagtcccagaaaaggaa
gttggcaaggttggtgaatgggccattcgcaaactgggcctggtaaagtatggagaaaaa
tatgccagtaactacagtggtggtaacaaacgaaagctctccacagccatggctttgatt
ggcgggcctcctgtggtgtttctggatgaaccaaccacaggcatggaccctaaagcccgg
agattcttgtggaattgtgccctaagcattgtcaaggaagggagatctgtagtccttaca
tctcatagtatggaagaatgtgaagctctttgtacaaggatggccataatggtcaacgga
aggttcagatgccttggcagtgtccaacatctgaaaaacaggtttggagatggttatacg
atagttgtacgaatagcgggctccaaccctgacctgaagcctgtccaggagttctttgga
cttgcatttccaggaagtgtcctaaaagagaaacatcgaaacatgcttcagtaccagctt
ccatcctccttgtcatctctagccaggatattcagcatcctctcccagagcaaaaagcga
ctccacatagaagattactctgtctctcagacaacacttgaccaagtatttgtgaatttt
gccaaggaccaaagtgatgatgaccacttaaaggacctgtcactacacaaaaaccagaca
gttgtagatgtggccgtgctcacatccttcttgcaggacgaaaaagtgaaagaaagttac
gtatga
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integrated database retrieval system
