Mus pahari (shrew mouse): 110323979
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Entry
110323979 CDS
T05929
Symbol
Hif1a
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah04066
HIF-1 signaling pathway
mpah04137
Mitophagy - animal
mpah04140
Autophagy - animal
mpah04148
Efferocytosis
mpah04659
Th17 cell differentiation
mpah04919
Thyroid hormone signaling pathway
mpah05167
Kaposi sarcoma-associated herpesvirus infection
mpah05200
Pathways in cancer
mpah05205
Proteoglycans in cancer
mpah05208
Chemical carcinogenesis - reactive oxygen species
mpah05211
Renal cell carcinoma
mpah05230
Central carbon metabolism in cancer
mpah05231
Choline metabolism in cancer
mpah05235
PD-L1 expression and PD-1 checkpoint pathway in cancer
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09130 Environmental Information Processing
09132 Signal transduction
04066 HIF-1 signaling pathway
110323979 (Hif1a)
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
110323979 (Hif1a)
04137 Mitophagy - animal
110323979 (Hif1a)
04148 Efferocytosis
110323979 (Hif1a)
09150 Organismal Systems
09151 Immune system
04659 Th17 cell differentiation
110323979 (Hif1a)
09152 Endocrine system
04919 Thyroid hormone signaling pathway
110323979 (Hif1a)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
110323979 (Hif1a)
05205 Proteoglycans in cancer
110323979 (Hif1a)
05208 Chemical carcinogenesis - reactive oxygen species
110323979 (Hif1a)
05230 Central carbon metabolism in cancer
110323979 (Hif1a)
05231 Choline metabolism in cancer
110323979 (Hif1a)
05235 PD-L1 expression and PD-1 checkpoint pathway in cancer
110323979 (Hif1a)
09162 Cancer: specific types
05211 Renal cell carcinoma
110323979 (Hif1a)
09172 Infectious disease: viral
05167 Kaposi sarcoma-associated herpesvirus infection
110323979 (Hif1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mpah03000
]
110323979 (Hif1a)
Transcription factors [BR:
mpah03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
110323979 (Hif1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
PAS
HIF-1
PAS_9
PAS_4
HLH
DDRGK
Motif
Other DBs
NCBI-GeneID:
110323979
NCBI-ProteinID:
XP_021057016
Ensembl:
MGP_PahariEiJ_G0029605
LinkDB
All DBs
Position
7:69366877..69409688
Genome browser
AA seq
825 aa
AA seq
DB search
MEGAGGENEKKKMSSERRKEKSRDAARSRRSKESEVFYELAHQLPLPHNVSSHLDKASVM
RLTISYLRVRKLLDAGDLDIEDEMKAQMNCFYLKALDGFVMVLTDDGDMIYISDNVNKYM
GLTQFELTGHSVFDFTHPCDHEEMREMLTHRNGPVRKGKEQNTQRSFFLRMKCTLTSRGR
TMNIKSATWKVLHCTGHIHVYDTNSNQPQCGYKKPPMTCLVLICEPIPHPSNIEIPLDSK
TFLSRHSLDMKFSYCDERITELMGYEPEELLGRSIYEYYHALDSDHLTKTHHDMFTKGQV
TTGQYRMLAKRGGYVWVETQATVIYNTKNSQPQCIVCVNYVVSGIIQHDLIFSLQQTESV
LKPVESSDMKMTQLFTKVESEDTSCLFDKLKKEPDALTLLAPAAGDTIISLDFGSDDTET
EDQQLEDVPLYNDVMFPSSNEKLNINLAMSPLPASETPKPLRSSADPALNQEVALKLESS
PESLELNFTMPQIQDQPASPSDGSTRQSSPEPNSPSDYCFDVDSDMVNVFKLELVEKLFA
EDTEAKNPFSTQDTDLDLEMLAPYIPMDDDFQLRSFDQLSPLESNSPSPPSMSTVTGFQQ
TQLQKPTITAAATTTVATATTDESKTVMKDNIEDIKILIASPSSTQVPQETTTAKASAYS
GTHSRTASPDRAGKRVIEQTDKAHPRSLNQSVTLNQRNTVPEEELNPKTIALQNAQRKRK
MEHDGSLFQAAGIGTLLQQPGDRAPTMSLSWKRVKGFISSEQNGTEQKTIILIPSDLACR
LLGQSMDESGLPQLTSYDCEVNAPIQGSKNLLQGEELLRALDQVN
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgccggcggcgagaacgagaagaaaaagatgagttctgaacgtcgaaaagaa
aagtctagagatgcagcaagatctcggcgaagcaaagagtctgaagttttttatgagctt
gctcatcagttgccacttccccacaatgtgagctcacatcttgataaagcttccgttatg
aggcttaccatcagttatttacgtgtgagaaaacttctggatgctggtgatctagacatt
gaagatgaaatgaaagcacagatgaactgcttttatctgaaagccctggatggctttgta
atggtgctaacagatgacggtgacatgatttacatttctgataacgtgaacaaatacatg
gggttaactcagtttgaactaactggacacagtgtgtttgattttactcatccatgtgac
catgaggaaatgagagaaatgcttacacacagaaatggcccagtgagaaaagggaaagaa
caaaacacacagcggagcttttttctcagaatgaagtgtaccctaacaagtcgggggagg
acaatgaacatcaagtcagcaacgtggaaggtgcttcactgcacgggccatattcatgtc
tatgataccaacagtaaccaacctcagtgtgggtacaagaaaccacccatgacgtgcttg
gtgctgatttgtgaacccattcctcatccatcaaatattgaaattcctttagacagcaag
acatttctcagtcgacacagccttgatatgaaattttcttactgtgacgaaagaattact
gagttgatgggttatgagccagaagaacttttgggccgctcaatttatgaatattatcat
gctttggattctgatcatctgaccaaaactcaccatgatatgtttactaaaggacaagtc
accacaggacagtacaggatgcttgccaaaagaggtggatatgtctgggttgaaactcaa
gcaactgtcatatataatacgaagaactctcagccacagtgcattgtgtgtgtgaattat
gttgtaagtggtattattcagcacgacttgattttctcccttcaacaaacagaatctgtg
ctcaagccagttgaatcttcagatatgaagatgactcagctgttcaccaaagttgaatca
gaggatacaagctgcctttttgataagcttaagaaggagcctgatgctctcacactgctg
gctccagctgctggggacaccatcatctctctggattttggaagcgatgacacagaaact
gaagatcaacaacttgaagatgttccattatataatgatgtaatgttcccttcttctaat
gaaaaattaaatataaatctggcaatgtctcctttacctgcctctgaaactccaaagcca
cttcgaagtagtgctgatcctgcactgaatcaagaggttgcattaaaattagaatcaagt
ccagagtcactggaacttaattttaccatgccccagattcaagatcagcctgcaagtcct
tctgatggaagcactagacaaagttcacctgagcctaacagtcccagtgactattgcttt
gatgtggatagcgatatggtcaatgtattcaagttggagctggtggaaaaactgtttgct
gaagacacagaggcaaagaatccattttcaactcaggacacagatttagacttggagatg
ctggctccctatatcccaatggatgatgatttccagttacgttcctttgatcagttgtca
ccattagagagcaattctccaagccctccgagtatgagcacagttacgggtttccagcag
acccagttacagaaacctaccatcactgccgctgccaccacaactgtcgccactgccacc
accgatgaatccaaaacagtgatgaaggacaatatagaagacattaaaatactgattgca
tctccatcttctacccaagtacctcaagaaacgaccactgctaaggcatcagcatacagt
ggcactcacagtcggacagcctcaccagacagagcaggaaagagagtcatagaacagaca
gacaaagctcatccaaggagccttaaccagtctgtcactttgaatcaaagaaatactgtt
cctgaggaagaattaaacccaaagacaatagctttgcagaatgctcagaggaagcgaaaa
atggaacatgatggctccctttttcaagcagcaggaattggaacattattgcagcaacca
ggtgaccgtgcacctactatgtcactttcttggaaacgagtgaaaggattcatatctagt
gaacagaatggaacggagcaaaagacaattattttaataccctccgatttagcatgcaga
ctgctggggcagtcaatggatgagagtggattaccacagctgaccagttatgattgtgaa
gttaatgccccgatacaaggcagcaaaaacctactgcagggtgaagaattactcagagct
ttggatcaagttaactga
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