Mus pahari (shrew mouse): 110324004
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Entry
110324004 CDS
T05929
Symbol
Prpf39
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mpah03041
]
110324004 (Prpf39)
Spliceosome [BR:
mpah03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
110324004 (Prpf39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_MalT
Motif
Other DBs
NCBI-GeneID:
110324004
NCBI-ProteinID:
XP_021057054
Ensembl:
MGP_PahariEiJ_G0029545
LinkDB
All DBs
Position
7:60841569..60870665
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AA seq
665 aa
AA seq
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MQNSHMDEYRNSDNGSTGNSSEVAVVEHPDFSTEIMNVTEMEQSPDASPSAHASTEENEM
ANAVDLPVTEAEGDFPPEFEKFWKTVEMNPQDFTGWVYLLQYVEQENHLMAARKAFDKFF
IHYPYCYGYWKKYADLEKRHDNIKQSDEVYRRGLQAIPLSVDLWIHYINFLKETLDPGDG
ETNSTIRGTFEHAVLAAGTDFRSDKLWEMYINWENEQGNLREVTAVYDRILGIPTQLYSH
HFQRFKEHVQNNLPRDLLTGEQFIQLRRELASVNGHSGDDGPPGDDLPSGIEDITDPAKL
ITEIENMRHRIIEIHQEMFNYNEHEVSKRWTFEEGIKRPYFHVKPLEKAQLKNWKEYLEF
EIENGTHERVVVLFERCVISCALYEEFWIKYAKYMENHSIEGVRHVFSRACTVHLPKKPM
AHMLWAAFEEQQGNINEARIILRTFEECVLGLAMVRLRRVSLERRHGNMEEAEHLLQDAI
KNAKSNNESSFYAIKLARHLFKIQKNLAKSRKVLLEAIEKDKENTKLYLNLLEMEYSCDL
KQNEENILNCFDKAIHGSLPIKMRITFSQRKVEFLEDFGSDVNKLLNAYDEHQTLLKEQD
TLKRKAENGSEEPEEKKAHTEDLSSAQIIDGDLQANQAAYNYSAWYQYNYQNPWNYGQYY
PPPPT
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattcccacatggatgagtacagaaactctgataatggcagcacaggcaacagt
tcagaggtagcagtagtagagcatccagattttagtactgagattatgaatgttacggag
atggaacagtcgcctgatgcctctcccagcgcacatgcgtctacagaagaaaatgaaatg
gcaaatgctgtggaccttccagtaacagaagcagaaggagacttccctccagagtttgaa
aaattttggaaaacagtagaaatgaatcctcaggattttacaggctgggtatatttgctt
cagtatgtagaacaggagaatcatttgatggctgccaggaaagcatttgacaaatttttc
atacactacccgtattgctatggttactggaaaaagtatgcagaccttgaaaagcgacat
gacaacattaaacaatcagatgaggtttatcgacgggggcttcaggcaatacctcttagt
gttgatctttggatacattatataaacttcttaaaagaaacattggaccctggtgatggt
gagacaaacagtacaataagaggaacttttgagcatgctgttctagctgcaggaacagat
tttcgatctgacaaattatgggaaatgtatataaactgggagaatgaacagggaaatctg
agagaagttacagctgtatacgatcgtattcttgggattccaacgcagctgtacagtcat
cattttcagagatttaaagaacatgtacaaaataacttgcctagagatcttttaactggt
gaacagtttattcagctgagaagggaattagcttctgtaaatggacacagtggtgatgac
ggacctcctggtgatgaccttccatcaggaattgaagacataactgatccagcaaagcta
attactgaaatagaaaacatgagacacagaatcattgaaattcatcaagaaatgtttaat
tataatgagcatgaagttagtaagaggtggacatttgaagaaggtattaaaagaccttat
tttcatgtgaagccactggaaaaggctcagctaaaaaactggaaagaatacttagaattc
gaaattgaaaatgggactcatgaaagagttgtggttctctttgaaagatgtgtcatatct
tgtgccctctatgaggagttttggattaagtatgccaagtacatggaaaaccatagcatt
gaaggagtgaggcatgtcttcagcagagcttgtactgttcatctcccaaagaaacccatg
gcacatatgctttgggcagcttttgaggaacaacaggggaatattaatgaagccaggatt
atcttgagaacatttgaagaatgtgttctaggattggcaatggttcgattgcgaagagta
agtttagaacgacggcatggaaatatggaagaagctgaacatttgcttcaagatgctata
aagaatgccaaatcaaataatgagtcatcattttatgctatcaaactagcccgacatctt
ttcaaaatacagaaaaatcttgcaaaatcaagaaaagtacttttggaagcaattgaaaaa
gataaggagaacacaaagttatacctcaatttacttgaaatggaatacagttgtgacctc
aagcaaaatgaagaaaatatccttaattgctttgacaaagccatacatggttcattgcct
attaaaatgagaattacattttctcaaagaaaagtggaattccttgaagattttggttca
gatgttaataagcttctgaatgcatatgatgaacatcaaacacttctaaaagaacaggat
actttaaaaaggaaagctgaaaatggctcagaagaaccagaagaaaagaaagcacacaca
gaagatttgtcatcagcacagatcattgatggggatttacaggcaaatcaagctgcatat
aattacagtgcctggtatcagtacaattatcagaatccttggaattatggacagtattat
cctccacctccaacttga
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