Mus pahari (shrew mouse): 110324095
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Entry
110324095 CDS
T05929
Symbol
Rtl1
Name
(RefSeq) retrotransposon-like protein 1
Organism
mpah
Mus pahari (shrew mouse)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RT_RNaseH_2
DUF4939
Retrotrans_gag
RT_RNaseH
Ty3_capsid
gag-asp_proteas
RVT_1
Asp_protease_2
RVP_2
Asp_protease
Motif
Other DBs
NCBI-GeneID:
110324095
NCBI-ProteinID:
XP_021057101
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Position
7:complement(103595659..103601961)
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AA seq
1346 aa
AA seq
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MIEPSEDSFETMMELKNPSSKQMESSEGSSNTVEETPGSSGVDAQVGSDSGPAQEEKEPP
SGPLKEMQELPTDLLQEVEEPSNGPNQEMQELPTDLLQEVEEPSKSSDISNQEGSDPLSE
ASDYSMDETINSFGTQSDQDDTDLGDDEEEEEEDGEEEGQPMNSPEEVVARMGNVISMFL
RMQDLKEQQRVAERLMMQAINEGRLPSLRPFSGDRRDYHEFVVLCQMTMQNYPSMLYNDE
LRVKFVIRHLTDLALEWANDLVEQNSPVINNFSAFLEAMSEKFEYRQTLRVAEDAMFNIR
QGNRCAADYINEFQGLIPTLGWPDEVLQAHLCQGLNEEIRHYLFRIPQPDSLDNLIVLVL
QLEEKLAERRALLRLPPESRPRSVAWMDAPAPEKWRVSSWLPNEFHPDIDRDHLFLLLLV
RVDPYHSVAVRALVDSGAEGNYMDERFAQEHYVELYEKPYPQIIQGVDGAPIGNEPVWLC
TEPLVCVHQKHYEYIEFDILPSPNFSIVLGMKWLRTHAPEVDWVRGRCTFHSPYCLRNCF
TPPPPCIALEKYSISLLPGLPHTYSDLADVFNPREADDETSDQPSSDGSDDLSESEPSEL
QQAGDSDQSGVFYESGDRETLEPVSARMQEKARQQEKAREQEEYWILYDMLTDRQDYTQM
VPELFDQLHGAAWFTKLELLGIKEGEMRHTVTHTEDTWRASFGFGIHQMRCYRPFTMNSY
SDEGNNIVHFILKDILGLFVICHGREVLVYSMSQEEHSQHVRQVLVRFRYHNIYCSLDKT
QFHRQSAEILGFNICPKGVKLNKNLMKLIVGCPVPGSRRCLQSVIDLVYPYRHFVENFAV
IAAPLVRQLLSSEPYYWGEEEQQALESLKRAFRKSPVLHHPKPQNPFYLETDVTGSFLSA
SLVQTDYETGKKSTCAFYSRALSTMEVEYPRVEMRILPIRAAFMVWCRYLENTEEPIMIL
LNTEDLASLNNDRLTVLLPGHWVFFFSHFNFGVMEMPDEGDTQALFRRCWNQRGFRARFL
RPLLLMSIREEEEEEEEEEPSMVRELLAAIPMDHILNGFLAHFSVAQIRAIVLNFFRGLL
YWKSILGVAAVLVMLRARQPLSPLPAPTLEVARPQHRHTLRLILDSTLIASSGMATAIAQ
LLSQMPPLVGANTLPARELAELFLGPRCWHRNALHSQPPRGMRFTPGFWLTLCEFFGIRV
NPEDDVFPDPYQHRYLELHVVGDEDVVLREALQDDLQRYRQCGLHDGLQDTSQDAQDNDV
QEDLLGDQEAVTFRPRNLLDPEVLDFLNNRLLYTLGTDGRLTLLSRDQVAQALTRFLAMA
SRMALPSRARELARLEELSDSDDELD
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaccctctgaagactcatttgagacgatgatggagcttaagaatccatcatca
aaacaaatggagtcctccgagggctcatccaacaccgttgaagagacaccaggcagcagc
ggggttgatgcccaggtgggctcagacagtggcccagcccaggaagaaaaggagccaccc
agtggtcccctcaaggaaatgcaagagctgcccactgatctactccaggaagtggaggag
ccatccaatggccccaaccaggaaatgcaagagctgcccactgatctactccaggaagtg
gaggagccatccaagtcaagtgatatttcaaaccaggaagggtcagatccactcagtgag
gcatccgattatagcatggatgaaacaatcaactcatttgggacccagtcagatcaagat
gatactgacctgggagatgatgaggaagaggaagaggaagatggtgaagaggaaggtcag
cccatgaactctccagaagaagtcgtggccaggatggggaacgtcatctccatgttcctc
cggatgcaagacctaaaagaacaacagagggtggcagaaaggctcatgatgcaagccatc
aatgaaggtcgcctgccctccctcaggcccttctctggagatcgcagagactaccacgag
ttcgtagtgctctgccagatgacaatgcaaaactacccaagtatgttatacaatgatgag
ctgcgggtgaaattcgtaatccgccacctgactgacctagccttggaatgggccaacgac
ctggtagagcagaacagccccgtgataaacaacttctcagccttcctggaggccatgtca
gaaaagtttgagtatcggcagacactgcgtgtggcggaagacgccatgttcaacatcagg
caggggaatcgctgtgccgccgattacatcaatgagttccagggtctgatacccacctta
ggctggccagatgaagtcctgcaggcccacctgtgccaggggctcaacgaagagatcagg
cattatctgttccgaatccctcagccggattccctggacaacctgatagtgcttgtcctg
caacttgaagaaaagctggcagagcggagagcattactcaggctgccacctgagtcgcgc
ccaagaagcgtagcctggatggatgcacctgccccagagaagtggagggtaagcagctgg
ctgcccaatgagttccacccagacattgatcgtgatcatctcttcttgctgctcttggtg
agagtggatccctaccacagtgtcgcagtgcgggccctggtggactcaggagcagaaggg
aactacatggatgagaggtttgcccaggaacactatgtggaactctatgagaagccttat
ccacagataatccaaggtgtggatggcgccccgattggcaatgaacccgtctggctgtgc
accgagcccctggtgtgtgtccaccagaagcactatgagtacattgaatttgacatctta
ccttcgcccaacttctccatcgtcttaggcatgaagtggctccgaacccatgcccctgaa
gttgactgggtcagaggccggtgtaccttccactctccctactgtctgaggaattgcttc
accccacctccaccatgcatcgcactagagaaatacagtataagcctactgcccggattg
ccacacacatactcagacctggccgacgtgttcaacccgagggaggcagatgatgagact
tccgaccagccaagctcagacggatccgatgatctttctgaatcagagccctctgagctt
cagcaggctggagacagtgatcaaagcggcgtcttttacgagtctggggaccgagagact
ttggaacctgtgagcgccaggatgcaagaaaaagccaggcagcaagagaaagccagggag
caagaggaatactggatactgtatgacatgctgactgacagacaagactacacgcagatg
gtaccagagctgttcgaccagttacatggagcggcatggttcacaaaactggagctgctt
gggattaaggaaggtgagatgaggcacactgtcacacacacagaagacacttggagagca
tcgttcggtttcggcattcaccagatgagatgctaccggcccttcacaatgaactcatac
tctgacgaagggaacaacattgttcacttcatcctaaaagacatcctaggcttgtttgtg
atttgccatggcagagaggtcctggtctactcaatgagccaggaggaacactctcagcat
gtccgccaagtcctggtccgctttcggtatcacaacatctactgttcactggacaaaact
cagttccatcgccagagcgcagaaatcttgggcttcaacatatgccccaaaggggtgaaa
ctgaacaagaacctcatgaagctcatcgtggggtgccctgtccctggcagcaggaggtgt
cttcagagtgtgattgacctcgtctatccctatcgccacttcgtggagaacttcgctgtc
atcgcagcacccctagtgagacaactgctgagctcagagccctactactggggagaagag
gagcagcaggccttggaatccctgaagagggctttccgcaagtcacccgttctccaccac
cctaaacctcagaacccattctacttggaaacagacgtcactgggtcattcctgtctgcc
tccctggtccaaaccgactacgaaactggcaagaaatcaacctgtgctttctattccaga
gccctgtctacgatggaggtggagtaccctcgagtagagatgaggatccttccaatccgg
gctgccttcatggtgtggtgccgctacctggagaacaccgaggagcccatcatgatcctt
ctcaacacagaggatctagcctctctgaataatgacaggctcaccgtacttctccccggg
cattgggtcttcttcttctcacacttcaattttggtgttatggagatgccagatgaaggt
gacacacaagcactcttccgcagatgttggaaccagagaggcttcagagcaaggtttctg
cgcccactgctgcttatgtccattagggaggaggaggaggaggaggaggaggaggagccc
agcatggtgagggagttactggctgccatcccgatggaccatatcctcaatggcttcctg
gctcacttcagtgtggcccagatccgggccattgtcctaaacttcttccgtggcctgctc
tactggaagagtatcctgggtgtggcagctgtcctggtgatgttgagagcaaggcagccc
ctctccccactgcctgcccctactttggaagtggccaggcctcagcaccggcacacactc
cgactcatcctggactcgaccctcattgcgagtagtggcatggccacagccatcgctcag
ttgctcagccagatgccccctctagtgggtgccaacaccctcccagctcgagagctggct
gagcttttcctgggcccgaggtgctggcatcggaatgctctgcattcccagcctccacgg
gggatgcgattcacccctgggttctggttgaccctgtgtgagttcttcgggatcagagtc
aaccctgaggatgacgtctttcctgacccataccagcaccggtacttggaactgcacgtc
gttggggatgaagatgtcgtcttgcgagaagccctgcaagacgacctgcaacgttaccgt
cagtgtggcctgcatgacggcctgcaagacacctcgcaggacgcgcaggacaacgacgtg
caagaggacctgcttggcgaccaagaagcggtcaccttccgaccacgaaatctgttggac
ccagaggtcctagatttcctcaacaaccggctactctacaccctgggcaccgacggccgt
ctcacgctgcttagcagagatcaggtggcccaggccctcacacgattcctggccatggcc
tccagaatggcgctgccttcccgagccagggaactagcaaggctagaagagctatcagac
tcagatgatgaacttgactga
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integrated database retrieval system
