Mus pahari (shrew mouse): 110324215
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Entry
110324215 CDS
T05929
Symbol
Cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110324215 (Cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110324215 (Cpsf2)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
110324215 (Cpsf2)
U7-dependent histone pre-mRNA processing factors
110324215 (Cpsf2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
110324215
NCBI-ProteinID:
XP_021057248
Ensembl:
MGP_PahariEiJ_G0029791
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Position
7:96211147..96238245
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AA seq
782 aa
AA seq
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MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRKHVHQIDAVLL
SHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTEDFTLFTLDDVD
AAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIILTYRTT
PGTLARFLIDNPTEKVTEIELRKRVKLEGKELEEYVEKEKLKKEAAKKLEQSKEADIDSS
DESDVEEDVDQPSAHKTKHDLMMKGEGSRKGSFFKQAKKSYPMFPAPEERIKWDEYGEII
KPEDFLVPELQATEEEKSKLESGLTNGEEPMDQDLSDVPTKCVSATESIEIKARVTYIDY
EGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKVYMPKLHETIDAT
SETHIYQVRLKDSLVSSLQFCKAKDAELAWIDGVLDMRVSKVDTGVILEEGELKDDGEDS
EMQVDAPSDSSAIAQQKAMKSLFGDDEKELGEESEIIPTLEPLPPHEVPGHQSVFMNEPR
LSDFKQVLLREGIQAEFVGGVLVCNNQVAVRRTETGRIGLEGCLCQDFYRIRDLLYEQYA
IV
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgacatctatcatcaagctaaccaccctctctggggtccaagaagagtcggctctctgc
tatcttctccaggttgatgagtttagatttttgttggactgtggctgggatgaacacttc
tctgtggacattattgattccctgaggaagcatgttcaccagatcgatgcagtgctcctg
tctcacccagatccactccacctcggtgccctcccattcgctgtggggaagctgggtctg
aactgtgccatctatgcaacaattcctgtttataaaatgggtcagatgttcatgtacgat
ctttatcagtctcgacacaacacagaagatttcaccctctttacactggatgacgtggat
gcagcctttgataaaatacagcagctgaaattctctcagattgtgaacctgaaaggcaaa
ggacacggtttgtctatcacacccctaccagctggccatatgataggagggacaatatgg
aaaatagtcaaagatggagaagaagaaattgtgtatgccgttgacttcaaccacaagagg
gagatccacttaaatggatgttccctggaaatgctaagcagaccctctctgcttatcaca
gattcatttaatgctacttatgtgcagcctagaaggaagcagagagatgagcagctcctg
acaaacgtcctggaaactcttcggggggatgggaacgtgctgatagctgtggacacagca
ggcagagttctggagcttgctcaactcctggatcagatttggagaactaaagatgccggg
ttgggcgtttactcgctggctctcctgaacaacgtcagttacaatgtggtggagttttct
aagtcacaggtagaatggatgagtgataaattgatgagatgttttgaagacaaaagaaat
aacccatttcagtttcgccatctctctctgtgccacggtctttctgacttggctcgagtt
ccaagccccaaagttgtacttgccagccaacctgacctggagtgtggattctcaagggac
ctctttattcagtggtgtcaggacccgaaaaactcaatcattctaacgtatagaacaact
cctgggactttagcacgtttcttaattgataatcctactgagaaagttacagaaatagag
ctgaggaaacgtgtgaagcttgaagggaaagaacttgaggaatatgtggaaaaagaaaaa
ctcaagaaagaagctgctaagaaactggagcagtcaaaagaggcagacattgactccagt
gacgagagtgacgtggaggaagatgtcgaccagccatcagctcacaagacaaagcacgac
ctgatgatgaagggggaaggcagccgcaaagggagcttcttcaaacaggccaagaagtcc
taccccatgtttcctgccccagaagaaaggattaaatgggacgagtatggcgagatcatc
aaaccagaagatttcttagtgccagaacttcaggctactgaagaagaaaaaagcaaatta
gaatctggtttgacaaatggagaggaacccatggaccaggacctgtctgatgtccccacc
aagtgtgtctctgcaacagagtctattgagataaaagccagagttacttacatagactat
gaaggacgctccgatggggactccattaaaaagatcatcaatcagatgaaaccacggcag
ctcatcattgtccacggcccaccagaggccagtcaggatctggccgagtgctgccgtgcg
tttggtgggaaagatattaaagtatacatgccaaagctgcacgagactatcgatgccacc
agtgagacgcatatctaccaggtaagattaaaagactctcttgtcagctcccttcagttc
tgtaaagctaaagatgccgagttagcttggatagatggcgttttagacatgagagtttcc
aaagtggacacaggagttattttagaagaaggagagctcaaggacgatggagaagactct
gaaatgcaagtggatgctccttcagattccagtgccatagcccagcagaaggccatgaag
agtctgtttggagatgatgagaaagagttgggtgaggagagtgagatcattcccacactg
gagcctttgccacctcacgaggttcctggacatcagtcagtttttatgaatgaaccgaga
ctgtctgacttcaagcaagttcttttgcgggaggggattcaagcggaatttgtagggggc
gtacttgtctgcaacaatcaagtagcagttcgcagaacagaaactggacgcatcgggtta
gaaggctgcctttgtcaagacttttataggatacgagaccttttgtatgaacagtatgcc
attgtgtaa
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