Mus pahari (shrew mouse): 110326107
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Entry
110326107 CDS
T05929
Symbol
Cpsf6
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 6
KO
K14398
cleavage and polyadenylation specificity factor subunit 6/7
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03015
mRNA surveillance pathway
mpah03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110326107 (Cpsf6)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
110326107 (Cpsf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110326107 (Cpsf6)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
110326107 (Cpsf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
110326107
NCBI-ProteinID:
XP_021059929
Ensembl:
MGP_PahariEiJ_G0031253
LinkDB
All DBs
Position
9:59148399..59182104
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AA seq
629 aa
AA seq
DB search
MADGVDHIDIYADVGEEFNQEAEYGGHDQIDLYDDVISPSANNGDAPEDRDYMDALPPTV
GDDVGKGAAPNVVYTYTGKRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRAN
GQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPCNKQFLSQFEMQSRKTTQSGQM
SGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPGNLIKHLVK
GTRPLFLETRIPWHMGHSIEEIPIFGLKAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPL
AGPPNRGDRPPPPVLFPGQPFGQPPLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPF
PPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPAFFPPPTNSGMPTSDSRGPPPTDP
YGRPPPYDRGDYGPPGREMDAARTPLSEAEFEEIMNRNRAISSSAISRAVSDASAGDLTS
SLASVGTTLSLDTKTYIGKTLVHMKKIEILAMNTQQVIVCGYRKRQFSGQAEVTHTINPS
TGFQRLQISEYEARLLTDSINPVISFRRRERSRERDHSRSREKSRRHKSRSRDRHDDYYR
ERSRERERHRDRDRDRDRERDREREYRHR
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atggcggacggtgtggaccacatagacatttacgcggatgtgggcgaagagttcaaccag
gaagcagaatatggtgggcatgatcagatagatttgtatgatgatgtcatctctccatct
gcaaataatggcgatgccccagaagatcgcgactacatggatgctcttccaccaactgtt
ggtgatgatgtgggtaaaggagccgcacccaacgttgtctacacttacactgggaagaga
atcgcattgtatattggaaatctaacatggtggacaacagatgaggatctaactgaggcc
gttcattctttgggagtaaatgacattttggagataaaattttttgaaaatagggcaaat
ggacaatcaaaaggatttgcccttgttggtgttggatctgaagcatcttccaaaaagtta
atggatcttttgcctaaaagagaacttcatggtcagaatcctgttgtaactccatgcaat
aaacagttcctgagtcaatttgaaatgcaatccaggaaaactacacaatcaggacaaatg
tctggggaaggtaaagctggtcctccaggaggcagttcacgtgcagcatttccacaaggt
ggtagaggacggggccgttttccaggggctgttcctggtggggacagatttcctgggcca
gcaggaccaggagggccacctccacctttcccaggaaatttgatcaagcatcttgttaaa
ggaactcggcctttgttcctggaaactaggattccatggcatatggggcacagcatagag
gaaatacccatttttggcctaaaagctggacaaactccaccacgtccacctttaggccct
cctggcccacctggtccaccaggtcctccacctcctggtcaggttctgccacctcctcta
gcaggacctcctaaccgaggagaccgccctccaccaccagttctttttcctggacaacct
tttgggcagcctccgctgggtccacttcctcctgggcctccacctccagttccaggctat
ggcccccctccaggtccaccgcctccacagcagggaccacctccacctccaggccccttt
ccacctcgaccaccaggtccactagggcctccccttacacttgctcctcctccacatctt
ccgggaccacctccaggtgccccaccaccagctccacatgtgaatcctgctttttttcct
ccaccaactaatagtggcatgccaacatcagatagtcgaggtccaccaccgacagaccca
tatggccgacctcccccatatgataggggtgactatggtccccctgggagggagatggat
gctgcaagaacacctctgagtgaggctgagtttgaagaaatcatgaatagaaatcgggca
atctcaagcagtgctatttcaagagctgtgtctgatgctagtgctggggatctgacatcc
tctttggcctcagtgggcactactctttctttggatacaaagacatacataggcaaaaca
cttgtgcacatgaaaaagatagaaatattagctatgaacactcaacaagtcattgtctgt
ggttatcgtaaaagacagttttcaggtcaggctgaggtgacacataccatcaatcccagc
acaggattccaaaggcttcaaatttctgagtatgaggccagactgttaacggacagcatt
aatccagtaatttcttttagaagacgtgaacgatcaagagaacgggaccatagtagatca
cgggaaaagagtcggcgacataaatctcggagtagggatcgccatgatgattattacaga
gagagaagcagagaacgagagagacaccgggatcgggatcgggaccgtgaccgagagcgt
gaccgagagcgagaataccgtcatcgttag
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