Mus pahari (shrew mouse): 110326202
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Entry
110326202 CDS
T05929
Symbol
Col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
110326202 (Col18a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
mpah04147
]
110326202 (Col18a1)
00535 Proteoglycans [BR:
mpah00535
]
110326202 (Col18a1)
00536 Glycosaminoglycan binding proteins [BR:
mpah00536
]
110326202 (Col18a1)
Exosome [BR:
mpah04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110326202 (Col18a1)
Proteoglycans [BR:
mpah00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
110326202 (Col18a1)
Glycosaminoglycan binding proteins [BR:
mpah00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110326202 (Col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
110326202
NCBI-ProteinID:
XP_021060062
Ensembl:
MGP_PahariEiJ_G0030892
LinkDB
All DBs
Position
9:complement(41736137..41849060)
Genome browser
AA seq
1773 aa
AA seq
DB search
MAPDPSRCLCLLLLLLSCRLVPASANGSSLSPLNPLVWLWPPKTTDSLEGPVSKPQNSSP
VQSTENPTTHVVPQDGLTEQQTTPASSKLPPEEGEEEEDREAGQGGSPATPAVPIPLVAP
AASPDMKEENVAGVGAKILNVAQGIRSFVQLWDEDSTLGHSTGIEASDSLIPTVLPSPAE
LSSAPQESKTTHWLSSAIPSSPDVQTTEAGTLAVPTQSPPFQSNLQAPLGRPSVPPDFPG
RAILSSPRIGAPPWENQEPPRRPQHLEGKGLLPLTARSSQQHRHSDDHSDTHGHVPLLPL
VTGPLVTASLSVHSLLSVPSSDPPGQLSQVAALPGFPGAWVSHVAPSSGTGLSNDFALVG
NGSLTSTSRCLPLPPTLALCSRLGIGHFRLPNHLHHTDSVEVEAAAQAWGRLLHTNCHPF
LAWFFCLLLAPSCGPGPPPPLPPCRQFCEALEDECWNYLAGDRLPVVCASLPFQEDGYCV
FIGPAAENVAEEVGLLQLLGDPLPEKISQIDDPHVGPAYIFGPDSSSGQVAQYHFPKLFF
RDFSLLFHVRPATEAAGVLFAITDAAQEVVSLGVKLSEVRDGQQNISLLYTEPGASQTQT
GASFRLPAFVGQWTHFALSVDGGSVALYVDCEEFQRVPFARSSQGLELEHGSGLFVGQAG
AADPDKFQGMISELKVRKTPRVSPVHCLDEDDEDEDRASGDFGSGFEESSKSHREDTSLL
PGLPQPPPVTSPPLAGGSTTEDPRTEETEEDTMVDSIGAETLPGTDSSGAWDEAIQNPGG
GLIKGGLKGQKGEPGAQGPPGPAGPQGPAGPVVQSPNSQPVPGAQGPPGPQGPPGKDGIP
GRDGEPGDPGEDGRPGDTGPQGFPGTPGDVGPKGEKGDPGVGPRGPPGPPGPPGPSFRQD
KLTFIDMEGSGFSGDIESLRGPRGFPGPPGPPGVPGLPGEPGRFGVNGSYAPGPAGLPGV
PGKEGPPGFPGPPGPPGPPGKEGPPGVAGQKGSVGDVGIPGPKGSKGDLGPIGMPGKSGL
AGSPGPVGPPGPPGPPGPPGPGFAAGFDDMEGSGMPLWTSARSSDGLQGPPGSPGLKGDP
GVAGIPGAKGEVGADGPQGIPGPPGREGAAGPPGPKGEKGMLGEKGNPGKDGVGRPGLPG
PPGPPGPVIYVSPEDRAIVSTPGPEGKPGYAGFPGPAGPKGDLGSKGEQGIPGPKGEKGE
PGTIFSPDGRALGHAQKGAKGEPGFRGPPGPYGRPGHKGEIGFPGRPGRPGTNGLKGEKG
EPGDASLGFSMRGLPGPPGPPGPPGPPGMPIYDSNAFVESGRPGLPGQQGVQGPSGPKGD
KGEVGPPGPPGQFPIDLFHLEAEMKGDKGDRGDAGQKGERGEPGAPGGGFFSSSVPGPPG
PPGYPGIPGSKGESIRGPPGPPGPQGPPGIGYEGRQGPPGPPGPPGPPSFPGPHRQTVSV
PGPPGPPGPPGPPGAMGASAGVRIWATYQTMLDKIREVPEGWLIFVAEREELYVRVRNGF
RKVLLEARTALPQGTGNEVAALQPPLVQLHEGSPYTRREYSYSTARPWRADDILANPPRL
TDRQPYPGVPHHHSSYVHLPPARPTSSPAHTHQDFQPVLHLVALNTPLSGGMRGIRGADF
QCFQQARAVGLSGTFRAFLSSRLQDLYSIVRRADRGSVPIVNLKDEVLSPSWDSLFSGSQ
GQLQPGARIFSFDGRDVLRHPAWPQKSIWHGSDPSGRRLMESYCETWRTEATGTTGQASS
LLSGRLLEQKAASCHNSYIVLCIENSFMTSFSK
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgaccccagcagatgcctctgcctgctgctgttgctgctttcctgccgcctt
gtgcctgccagcgctaatgggagttccctgagtcccctgaatcccctggtgtggctctgg
ccgcccaagaccactgattccttggaaggccctgtctcgaaaccccagaacagttcacct
gtgcagtccacagagaaccccaccacgcacgtggtcccccaggatggcctcacggaacaa
cagacgactcctgccagctccaagctgcccccggaagagggggaggaggaggaggatcgg
gaagctggccaggggggcagccctgcaacccctgctgtccccattcccctggtggcccct
gctgcgagcccagacatgaaggaggagaatgttgcgggcgtcggagccaagattctgaat
gtggctcagggcattcggagcttcgtccagctgtgggatgaggactcgactcttgggcac
tctactgggattgaggcttcagattccttaatccctacagtcctcccctctcctgccgag
ctctccagtgctccccaggagagtaagaccactcactggctaagcagtgccattccaagt
tctccagatgtccagacaaccgaggcgggcacgctggctgtgcccacccagtcgcctccc
ttccagagcaacctccaggcaccactgggaagaccctcggtaccaccagacttcccaggt
agagcaattctctcttctccacggatcggggctcctccctgggagaaccaggagcctccc
aggcggccccagcatctggaggggaaaggactcttgcctctgacagccaggtccagccag
cagcacagacactctgatgatcactctgacacccacgggcacgtacctcttcttcccttg
gtgacgggtcctctggtgacggcttctctgagtgtgcacagtttactctctgttccttcc
tctgaccctcccggccagctctctcaggtagcagctttacctgggttccctggtgcttgg
gtttcccacgtggctccctcttcagggactgggctttctaatgacttcgcactggtggga
aatggctctctgacctctaccagccgctgcctgcccctcccacccactctggctctctgc
agccgtttaggtataggacactttcggctgcctaatcatcttcaccatacagacagcgtg
gaggtagaggccgccgcgcaggcttgggggcgcctcctccacacgaactgccaccccttc
cttgcctggttcttctgtctgctgctggctccctcctgtggcccaggcccaccacccccc
ttgccaccctgccggcagttctgtgaggccttggaggacgaatgttggaactacctagct
ggggacaggctgcctgtcgtctgtgcctctctcccttttcaggaggacgggtactgtgtg
ttcattgggccagctgcagagaatgttgctgaggaggtggggctgctgcagctccttgga
gaccccctccccgagaagatctcacaaattgacgaccctcacgtcgggccggcctacatc
tttggaccagactccagcagtggccaggtggcccagtatcacttcccgaaactcttcttc
cgggacttttcgctgctgtttcatgtccggccagccacagaggccgcaggggtgctattt
gccatcacagatgccgcccaggaggtagtctcactaggcgtgaaactctcagaggtccga
gatggacagcaaaacatctcactgctctacacggagcccggggccagccagacccaaacg
ggagctagcttccgcctacctgcatttgttggccagtggacacacttcgcgctcagcgtc
gatggaggctctgtggctctctacgtggactgtgaagagttccagagggtgccatttgct
cggtcctcacagggactggagctagagcatggctctggcctctttgtgggtcaggctgga
gcggcagaccctgataagttccaggggatgatctcggagctgaaggtgcgtaaaaccccc
cgggtgagccctgtgcactgtctggatgaagatgatgaagatgaagaccgggcatctgga
gattttggaagtggctttgaagaaagcagcaagtcacacagggaggatacatctctacta
cctgggctccctcagccacctcccgtcacttccccacccctggctggaggcagcaccaca
gaagatcctagaacagaagaaacggaggaagacaccatggtagattctataggagctgag
acccttcctggcacagattcaagtggtgcatgggatgaggctatccagaaccccggaggt
ggcttgataaagggaggcttgaaaggacaaaagggagaaccaggtgctcagggtccacct
ggcccagctgggccccagggtcctgccggtccagtggtccagagccccaactcacaacct
gtacctggagcacaaggacccccgggacctcaggggccaccagggaaggatggcattcca
ggaagggatggtgaaccgggtgaccctggtgaagacgggaggccgggtgacactggacct
caaggctttccagggaccccaggagacgtgggccctaagggtgagaagggagatcctggt
gttgggccccgaggacctccagggcctccagggccaccaggaccctccttcagacaggac
aagctgaccttcattgacatggagggatccggtttcagcggagacatagagagcctcaga
ggcccacgaggcttccctggccctccggggccccctggtgtcccaggactccctggtgag
ccaggacgctttggggtcaatggttcctatgcaccaggacctgcaggccttcctggtgta
cctgggaaggaaggaccccctggttttccgggtcccccgggacctccaggtcctccaggc
aaagagggcccaccaggagtggccggccagaaaggcagtgttggtgatgtgggcatccca
ggacccaaggggagcaaaggtgacctaggacccataggtatgcctggcaagtctggcttg
gctggatcccctgggccagttggacccccaggacctccaggacctccagggccaccagga
ccaggatttgctgctggattcgatgacatggaaggctctggaatgcccctctggacaagt
gcccgaagctccgatgggctgcagggacctccagggtcgccgggactcaagggggatcct
ggagtggcaggcataccgggagccaagggagaagttggagcagacggaccccagggcatc
cctggtcccccaggaagagaaggtgcagctggacccccggggccaaagggagagaaaggg
atgctgggagaaaagggaaacccaggaaaagatggagtgggccggccgggcctccctggc
cctccaggacctccaggacctgtgatctatgtgtcacctgaggatagagctatagtgagc
acgccaggaccagagggcaagccagggtacgcaggctttcccggacctgctggaccgaag
ggtgacctgggttccaaaggcgagcagggaattccggggcccaagggtgagaagggagag
ccaggcactatctttagccctgatggcagagccctgggccacgcccagaagggagccaag
ggagagccaggctttcgaggacccccgggtccttatggacgacctgggcacaagggtgaa
attggcttccctggacggccgggtcgacccggaacgaatggcttaaagggagagaaaggg
gagcctggcgatgccagccttgggttcagcatgaggggattgcctggcccccctgggcct
ccaggccccccaggtcctcctgggatgcccatctatgacagcaatgcatttgtggagtct
ggccgacctggactaccaggacagcagggtgtgcaggggccttcaggaccaaagggtgac
aaaggagaggtgggcccacctgggccaccagggcaattccccatcgacctcttccacctt
gaagctgaaatgaagggggacaagggagaccgaggggatgctggacagaaaggagagagg
ggagaacctggggctcctggtggcggattcttcagctcaagtgtacctggcccacccggc
ccacctggataccctggaattccgggttcaaagggagagagcatccggggtccacccggc
cctcctggcccccagggacctcctggcattggctatgaggggcgccagggtcccccggga
cctccgggacctccaggacctccctccttcccaggccctcacagacagaccgtcagtgtt
cctggtcctccaggcccacctggtcctccaggtcccccaggagccatgggtgcctctgcc
ggggtgaggatctgggccacataccagaccatgctggacaagatacgggaggtgccggag
ggctggctcatctttgtggccgagagagaagagctctacgtacgcgttagaaatggcttc
cggaaggtgctgctggaggcccggacagccctcccgcaaggcacgggcaatgaggtggct
gctttgcagcccccattggtccagcttcacgagggcagtccatatacccggagggagtac
tcctattccacggcacgaccctggcgagcagatgacatcctggccaacccgccacgtctg
acagaccgccagccctacccaggagttccacaccaccacagttcctatgtgcacctgcca
ccagcccgccccacctcctcacctgctcatacacaccaggactttcagccagtgctccac
ctggtggcactgaacacccccctgtctggaggcatgcgtggtatccgtggagcagatttc
cagtgcttccagcaagcccgagccgtggggctgtcgggcaccttccgggcttttctgtcc
tctaggctgcaggatctctacagcattgtgcgccgtgccgaccgcggctctgtgcccatc
gtcaacctgaaggacgaggtgctatctcccagctgggactccctgttttccggctcccag
ggtcaactgcaacccggggcccgaatcttttctttcgatggcagagatgtcctgagacac
ccagcctggccgcagaagagcatatggcacggctcggaccccagtgggcggaggctgatg
gagagttactgtgagacatggcggactgaagctactgggactacaggtcaggcttcctcc
ctgctgtcaggcaggctcctggaacagaaagctgcgagctgccacaacagctacatcgtc
ctgtgcatcgagaatagcttcatgacctctttctccaaatag
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integrated database retrieval system
