Mus pahari (shrew mouse): 110326335
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Entry
110326335 CDS
T05929
Symbol
Ptbp1
Name
(RefSeq) polypyrimidine tract-binding protein 1 isoform X1
KO
K13218
polypyrimidine tract-binding protein 1
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110326335 (Ptbp1)
03041 Spliceosome [BR:
mpah03041
]
110326335 (Ptbp1)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
110326335 (Ptbp1)
Spliceosome [BR:
mpah03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
110326335 (Ptbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
Nup35_RRM
Motif
Other DBs
NCBI-GeneID:
110326335
NCBI-ProteinID:
XP_021060344
Ensembl:
MGP_PahariEiJ_G0030958
LinkDB
All DBs
Position
9:44388850..44398838
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AA seq
555 aa
AA seq
DB search
MDGIVPDIAVGTKRGSDELFSTCVSNGPFIMSSSTSAANGNDSKKFKGDNRSAGVPSRVI
HVRKLPSDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVAPVL
RGQPIYIQFSNHKELKTDSSPNQARAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQS
PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSL
DGQNIYNACCTLRIDFSKLTSLNVKYNNDKSRDYTRPDLPSGDSQPSLDQTMAAAFGAPG
IMSASPYAGAGFPPTFAIPQAAGLSVPNVHGALAPLAIPSAAAAAAAGRIAIPGLAGAGN
SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGSQAQLAMSHLNG
HKLHGKSVRITLSKHQSVQLPREGQEDQGLTKDYGSSPLHRFKKPGSKNFQNIFPPSATL
HLSNIPPSVSEDDLKSLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIELHNHDL
GENHHLRVSFSKSTI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atggacggcatcgtcccagacatagcagtcggtacaaagcggggatccgacgagctcttt
tccacgtgtgtcagcaacggccccttcatcatgagcagctccacctcagcagccaatgga
aacgatagcaagaagttcaaaggtgacaacaggagcgcaggagtcccttccagagtcatt
catgtccgaaagctacccagcgatgttactgagggcgaggtcatctccctggggctgccc
tttgggaaggttaccaatctccttatgctgaaggggaagaaccaggccttcattgaaatg
aatacagaggaggctgccaacactatggttaactactacacgtcggtggcgccagtgctt
cgtggacagcccatctatatccagttctccaaccacaaagagctcaagactgacagctcg
cccaaccaggcacgtgcccaggcagccctgcaggctgtgaactccgtccagtctggaaac
ctggccttggcagcctccgctgctgccgtggacgcaggaatggcaatggcaggccagagc
ccagtgctcaggatcattgtggaaaaccttttctacccagtgaccctggacgtgctgcac
cagatcttctctaagtttggcacagtcctgaagatcatcacgttcaccaagaacaaccag
ttccaggcgctgctgcagtatgctgaccctgtgagcgcccagcacgccaaactgtccctg
gatggccagaacatctacaacgcctgctgcacgcttcgcatcgatttctccaagctcacc
agtctcaacgtcaaatacaacaatgataagagcagagactacactcgacctgacctgccc
tctggagacagccaaccttcgctggaccagaccatggcagcagcctttggtgcgcccggc
ataatgtcagcctctccgtatgcaggagccgggttccctcccacctttgccatccctcag
gccgcaggcctctctgtccctaatgtccatggagccctggcccccctggccatcccgtct
gctgctgctgctgctgcggctggccgcattgccatcccagggttggcaggtgctgggaat
tccgtccttttggtcagcaacctgaaccctgagagagtcacaccccaaagcctctttatt
ctcttcggtgtctatggtgatgtgcaacgggtgaagatcctgttcaataagaaggagaat
gcacttgtgcagatggcagacggcagccaggcccaactggccatgagccacctgaatggg
cacaagctgcacgggaagtcagtgcgcatcacactgtcaaagcatcagagtgtgcagctg
cctcgggagggtcaggaggaccagggcctgaccaaggattatggcagctccccgctgcac
cgcttcaagaaaccaggctccaagaacttccagaacatctttccaccctcagctaccctg
cacctctccaacatcccgccttctgtgtcagaggatgacctcaagagcctcttctccagc
aatggtggtgtggtcaagggcttcaagttcttccagaaggaccgcaagatggcattgatc
cagatgggctctgtggaggaggcagtgcaggcgctgattgaactgcacaaccatgacctg
ggcgagaaccaccacctgcgagtgtccttttccaagtccaccatctag
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