Mus pahari (shrew mouse): 110326354
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Entry
110326354 CDS
T05929
Symbol
Cdc40
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110326354 (Cdc40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mpah03041
]
110326354 (Cdc40)
Spliceosome [BR:
mpah03041
]
Complex C
Other components
Step II factors
110326354 (Cdc40)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WDR55
EIF3I
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR75_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
WD40_RFWD3
Beta-prop_RIG_2nd
ANAPC4_WD40
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_NWD2_C
WD_LRWD1
WDR54
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
110326354
NCBI-ProteinID:
XP_021060389
Ensembl:
MGP_PahariEiJ_G0030678
LinkDB
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Position
9:complement(7086388..7138856)
Genome browser
AA seq
579 aa
AA seq
DB search
MSAAIAALAASYGSGSGSESDSDSEGSRCPLPAADSLMHLTKSPSAKLSLTVAVDSAPEV
AVKEDLETGVHLDPAVKEVQYNPTYETMFAPEFGPENPFRTQQMAAPRNMLSGYAEPAHI
NDFMFEQQRRTFATYGYALDPSLDNHQVSAKYIGSVEEAEKNQGLTVFETGQKKTEKRKK
FKENDASNIDGFLGPWAKYVDEKDVAKPSEEEQKELDEITAKRQKKGKQEEEKPGEEKTI
LHVKEMYDYQGRSYLHIPQDVGVNLRSSVPPEKCYLPKKQIHVWSGHTKGVSAVRLFPLS
GHLLLSCSMDCKIKLWEVYGDRRCLRTFIGHSKAVRDICFNTAGTQFLSAAYDRYLKLWD
TETGQCISRFTNRKVPYCVKFNPDEDKQNLFVAGMSDKKIVQWDIRSGEIVQEYDRHLGA
VNTIVFVDENRRFVSTSDDKSLRVWEWDIPVDFKYIAEPSMHSMPAVTLSPNGKWLACQS
MDNQILIFGAQNRFRLNKKKIFKGHMVAGYACQVDFSPDMSYVISGDGNGKLNIWDWKTT
KLYSRFKAHDKVCIGAVWHPHETSKVITCGWDGLIKLWD
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgcgattgcagctctagctgcttcgtatggctcgggttcggggtccgagtcg
gattcggacagtgagggcagtcggtgtccgctgccagccgcggactctctcatgcattta
accaaatcgccttcagccaaactctctctgaccgtggcggtggactcggctccggaggtg
gcagttaaggaagatctggagactggagttcaccttgaccctgctgtcaaagaagttcag
tataatcctacctatgagaccatgttcgctcctgagtttggaccagaaaatccctttcga
acacagcaaatggctgcccctagaaatatgctttctgggtatgcagagccagcgcatatc
aatgacttcatgtttgaacaacaaagaagaacattcgctacgtatggctatgcactggac
ccttcgttagataatcatcaggtgtctgctaagtatattggctctgtggaagaagcagag
aagaaccaaggcttaactgtatttgaaactggtcagaagaaaacagaaaagagaaaaaag
ttcaaagaaaatgatgcatctaatattgatggtttcttgggaccatgggcaaaatatgtg
gatgaaaaagatgtggccaaaccttcagaagaagaacaaaaggaattggatgaaatcaca
gccaagaggcagaaaaaaggcaaacaggaagaagagaaacctggggaggagaagacaatc
ttacatgttaaagaaatgtatgactatcaaggcaggtcttaccttcacatacctcaggat
gttggtgttaatctacggtcatctgtgccacctgaaaaatgttaccttcccaaaaaacaa
attcacgtgtggtctggacacacaaagggtgtcagtgctgtcagactctttcctctttct
ggacatctgctgctgtcttgttccatggactgtaaaattaagctatgggaagtttatgga
gaccggcgctgtctgagaacatttattggtcacagtaaagctgtgagagacatctgcttc
aacactgcaggaacacagttcctcagtgcggcctacgacaggtaccttaaactctgggac
accgagacaggacagtgtatatcaagatttacaaaccgcaaagttccctattgtgtcaag
ttcaatcctgatgaagataagcaaaatctctttgtggctgggatgtctgataaaaagatt
gtacagtgggacatccgcagtggagagattgttcaggaatatgatcggcatctgggggct
gtcaacacgattgtttttgttgatgagaaccgaagattcgtgagtacatctgatgataaa
agcctacgagtttgggaatgggatatccctgtggattttaagtacatagcagagcccagc
atgcactcaatgcccgcagtgactttgtctccaaatgggaaatggctagcatgccagtca
atggacaaccaaatcttaatttttggagcacagaacagattcagattaaataagaagaaa
atttttaagggccacatggtagcaggctacgcttgtcaggtagacttctcaccagacatg
agctatgtgatttcaggagatggaaatgggaaactaaacatctgggactggaagaccaca
aaactctacagtcgctttaaagcccatgataaagtgtgcataggcgcagtgtggcaccct
catgagacatccaaggtcatcacctgtggttgggatggcctcattaagttgtgggattag
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