Mus pahari (shrew mouse): 110326541
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Entry
110326541 CDS
T05929
Symbol
Pan2
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit PAN2 isoform X1
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110326541 (Pan2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110326541 (Pan2)
Enzymes [BR:
mpah01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110326541 (Pan2)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110326541 (Pan2)
mRNA degradation factors
3'-5' decay
Pan complex
110326541 (Pan2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAN2_N
UCH_1
RNase_T
UCH
WD40_like
WD40_CDC20-Fz
Beta-prop_THOC3
VPS11_N
Motif
Other DBs
NCBI-GeneID:
110326541
NCBI-ProteinID:
XP_021060717
Ensembl:
MGP_PahariEiJ_G0031154
LinkDB
All DBs
Position
9:complement(48778092..48796117)
Genome browser
AA seq
1201 aa
AA seq
DB search
MNFEGLDPGLAEFSPAMHSTLDPVLDAHLNPSLLQNVELDPEGVALEALPVQESVHIMEG
VYSELHSVVAEVGVPVSVSHFDLHEEMLWVGSHGGHATSFFGPALERYSSFQVSGGDDIR
QIQSLENGILFLTKNNLKFMARGGLIMFDYLLDESEDMHSLLLTDSSTLLVGGLQSHILE
IDLNTVQETQKYAVETPGVTIMRQTNRFFFCGHTSGKVSLRDLRSFKVEHEFDAFSGSLS
DFDVHGNLLAACGFSSRLTGLACDRFLKVYDLRMMRAITPLQVHVDPAFLRFIPTYTSRL
AIISQSGQCQFCEPTGLANPADIFHVNPVGPLLMTFDVSASKQALAFGDSEGCVHLWTDS
PEPSFNPYSRETEFALPCLVDSLPPLDWSQDLLPLSLIPVPLTTDALLSDWPAANSAPAP
RRAPPVDAEILRTMKKVGFIGYAPNPRTRLRNQIPYRLKESDHEFDNFSQVTESPTGREE
EPLHTVSKKYRKVTIKYSKLGLEDFDFKHYNKTLFAGLEPHIPNAYCNCMIQVLYFLEPV
RCLIQNHLCQKEFCLACELGFLFHMLDLSRGDPCQGSNFLRAFRTIPEASALGLILADSD
EASGKGSLARLIQRWNRFILTQLHQDMQELEVPQAYRGAGGSFCSSGDSIIGQLFSCEME
NCSLCRCGSETVRASSTLLFTLSYPEDKTGKNYDFAQVLKRSICLEQNTQAWCDNCEKYQ
PTIQTRNIRHLPDILVINCEVNSSKEADFWRLQAEVAFKIAVKKFSGEVKSKEFALADRK
ELRSPEGFLCSSIEELKNVWLPFSIRMKMTKNKGLDVCNWADEHELSSLGAPSQWGPARA
EEEHGVYVYDLMATVVHILDSRTGGSLVAHIKVGETYHQRKEGVTHQQWYLFNDFLIEPI
DKYEAVQFDMNWKVPAILYYVKRNLNSRYNLNIKNPIEASVLLAEASLARKQRKTHTTFI
PLMLNEMPQVGDLVGLDAEFVTLNEEEAELRSDGTKSTIKPSQMSVARITCVRGQGPNEG
IPFIDDYISTQEQVVDYLTQYSGIKPGDLDAKISSKHLTTLKSTYLKLRFLIDIGVKFVG
HGLQKDFRVINLMVPKDQVLDTVYLFHMPRKRMISLRFLAWYFLDLKIQGETHDSIEDAR
TALQLYRKYLELSKNGTEPESFHKVLKGLYEKGRKMDWKVPEPESQTSPKNAAVFSSVLA
L
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgagggtctggatcctggactggccgaattttccccagctatgcattctacc
ctggacccagtcctggatgcccacctgaatccaagtttgctacagaatgtcgagctagac
ccagagggagtggccttggaggctcttcctgtccaggagtcagtgcacataatggaaggt
gtctactctgagttgcacagcgtggtggctgaagtgggagtgcctgtgtctgtctcccac
tttgatttacatgaggagatgctgtgggtggggagccatgggggccacgccacctccttc
ttcggtccagctctggagcgctactcatcctttcaagtcagcggcggtgatgacatccgg
caaatccagagcctggagaacggcatcctcttcctcaccaagaacaacctcaagttcatg
gcccgaggggggctcattatgtttgactatttgctggatgagagcgaggacatgcacagc
ctcctcctgacagacagcagcactctgcttgttggcgggctgcagagccacatactagag
attgatctgaacactgtccaggagactcaaaagtatgcagtcgagacacccggagtcacc
atcatgagacagacaaatcgcttcttcttctgtggccacacatctggcaaggtttctctg
cgagacctccgtagttttaaagtggagcatgaatttgatgccttctcagggagtctgtca
gattttgatgttcatggcaacctgctggctgcctgcggcttctccagtcgcctaactggt
ctggcctgtgaccgtttcctcaaagtgtatgacctgcgcatgatgcgtgccatcacgccc
cttcaagtgcacgtggatccggccttcttacgattcatacccacatacacttcccgcctt
gctatcatctcccagtcaggtcaatgccagttttgtgaacccacaggcctggccaaccca
gccgacatcttccatgtgaaccccgtgggacctttgctaatgacgtttgatgtgtcagcc
agcaagcaggccctggcctttggggattctgagggctgtgtgcatctctggactgattcc
cctgagccgtccttcaacccttactcccgagagactgagtttgctctgccctgtctcgtg
gactccttgcctcctctggactggagccaggatcttctgccgctttccctcattcctgtc
ccacttaccactgatgcactgctctccgactggcctgctgccaactctgctcctgctccc
aggcgagcaccacctgtggatgcagaaattcttcgaaccatgaagaaagtgggcttcatt
ggctatgctcccaaccctcgaaccaggctgcgcaaccagattccctatcgactaaaggag
tcagaccatgaatttgacaacttcagccaagtcacggagtcaccgacagggcgagaagag
gagcctctccacacagtttctaagaaataccggaaggtaaccatcaaatactccaaacta
ggactggaagactttgacttcaaacactacaataagactctgtttgctgggttagagcct
cacatccccaatgcctactgtaactgcatgatccaggtgctctatttcttggagcctgtt
cgctgtctgatccagaaccacctttgccaaaaggagttctgcctggcgtgcgagctcggt
ttcctcttccacatgctagacctctctcgtggcgatccttgtcagggcagtaatttcctc
cgagctttccggaccattcctgaggcctcggcactgggtctcatccttgctgactcggat
gaggcttcaggcaagggcagcctggccaggctcatccagaggtggaaccgcttcatcctc
actcagctacatcaggatatgcaggagctggaagtgccccaggcttatcgaggtgctgga
ggcagtttctgctcatcaggggactccatcattgggcagctgttcagttgtgagatggag
aattgcagcctttgccgctgcggcagcgagactgtgcgggcctcgtccaccctactcttc
acactctcctaccccgaggataaaaccgggaagaactatgactttgctcaggtgctgaag
cgaagtatctgcttggagcagaacacacaggcctggtgtgacaactgtgagaagtaccag
cccacaattcagacccgaaacatccgacatctgccagatattcttgtcattaattgtgaa
gtgaatagctcaaaagaggctgatttctggagactgcaagctgaggttgccttcaaaata
gccgtgaaaaagttcagcggggaagtgaagagcaaggagtttgctttagctgatcggaag
gagctgaggagtcctgagggctttctgtgctcctccatcgaggagctgaagaatgtctgg
cttccattttccatccgcatgaagatgaccaagaacaaagggctggatgtttgcaactgg
gctgacgagcatgagcttagcagcctgggtgccccctcgcagtggggtccggccagggca
gaggaggagcatggtgtctatgtatatgacctgatggctactgtggtacacatcctggac
tcacgaacaggcggcagcttggtggctcacataaaagttggcgagacctaccaccagcgc
aaggagggcgtgactcatcagcagtggtatctcttcaatgacttccttattgaacctatt
gataagtatgaagccgtgcagtttgacatgaattggaaagtacctgcaatcctgtattat
gtcaaaaggaatctgaattccagatacaatctgaacatcaagaaccccattgaggccagc
gtgctgctggcagaagcctcgctggcacggaaacaacggaaaacacacacgacctttatt
ccattgatgctgaatgagatgccacaggttggagacctggtgggcctggatgccgagttt
gtcactcttaatgaggaagaagcagagttacgcagtgatggtaccaagtccaccattaag
ccaagccagatgtcagtagcaaggatcacctgtgttcggggccaagggcctaatgagggc
atccccttcattgatgactacatctctacacaggagcaggtagtagattacttgactcag
tactcggggataaagccaggagaccttgatgccaaaatctcctcaaagcacctcacaact
ctcaagtctacctacttaaagcttcgctttctcattgatattggagtcaagtttgtgggt
catggtctgcagaaggacttccgggtcatcaacctcatggtgcccaaggaccaagttctt
gacacagtctacctgttccacatgccccgaaagcgaatgatttcccttcgattccttgct
tggtactttctagacctgaagattcaaggtgagacccatgacagcattgaagatgcccgc
acagcccttcaactctaccggaagtatctggagctgagcaagaacggcaccgagcccgag
tccttccacaaggtgctcaagggtctctatgagaagggccgaaagatggactggaaggtg
cctgagcctgaaagccagacaagccccaagaacgcagctgtcttctcctcagtgctggca
ctgtga
DBGET
integrated database retrieval system
