Mus pahari (shrew mouse): 110327067
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Entry
110327067 CDS
T05929
Symbol
Smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03082
ATP-dependent chromatin remodeling
mpah04714
Thermogenesis
mpah05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110327067 (Smarcc2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110327067 (Smarcc2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110327067 (Smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpah03021
]
110327067 (Smarcc2)
03036 Chromosome and associated proteins [BR:
mpah03036
]
110327067 (Smarcc2)
Transcription machinery [BR:
mpah03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110327067 (Smarcc2)
Chromosome and associated proteins [BR:
mpah03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110327067 (Smarcc2)
PBAF complex
110327067 (Smarcc2)
GBAF(ncBAF) complex
110327067 (Smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
Motif
Other DBs
NCBI-GeneID:
110327067
NCBI-ProteinID:
XP_021061444
Ensembl:
MGP_PahariEiJ_G0031146
LinkDB
All DBs
Position
9:complement(48609870..48639883)
Genome browser
AA seq
1243 aa
AA seq
DB search
MAVRKKDGGPNVKYYEAADTVTQFDNVRLWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHILAAAYKFKSDQGWRRYDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLGKLKDIVKRHQGTISEDKSNASHVVCP
VPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDTWIPASEIEASVEDAPTPEKPRKVHAK
WILDTDTFNEWMNEEDYEVSDDKSPVSRRKKISAKTLTDEVNSPDSDRRDKKGGNYKKRK
RSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREEEQEDLTKDMDEPSPVPNVEEVTLPKT
VNTKKDSESAPVKGGTMTDLDEQDDESMETTGKDEDENSTGNKGEQAKNPDLHEDNVTEQ
THHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEY
LTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDAESRPTPMGPPPTSHFHVLADTPSG
LVPLQPKPPQGRQVDADTKAGRKGKELDDLVPETAKGKPELQNPASQQMLNFPEKGKEKP
ADMQNFGLRTDMYTKKNVPSKSKAAASATREWTEQETLLLLEALEMYKDDWNKVSEHVGS
RTQDECILHFLRLPIEDPYLEDSEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVA
SAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAAKVTGKADPAFGLESSGIAGTASDEPE
RIEESGTEEARPEGQAADEKKEPKEPREGGGAVEEEAKEEISEVPKKDEEKGKEGDSEKE
SEKSDGDPIVDPEKDKEPTEGQEEVLKEVAEPEGERKTKVERDIGEGNLSTAAAAALAAA
AVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREREALEYQRQQLLA
DRQAFHMEQLKYAEMRARQQHFQQMHQQQQQQPPTLPPGSQPIPPTGAAGPPTVHGLAVP
PAAVASAPPGSGAPPGSLGPSEQIGQAGTTAGPQQPPQAGAPQPGAVPPGVPPPGPHGPS
PFPNQPTPPSMMPGAVPGSGHPGVAGNAPLGLPFGMPPPPAAPSVIPFGSLADSISINLP
PPPNLHGHHHHLPFAPGTIPPPNLPVSMANPLHPNLPATTTMPSSLPLGPGLGSAAAQSP
AIVAAVQGNLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaggacggcggccccaacgtgaagtactacgaggccgcggacacc
gtgacccagttcgacaacgtgcggctctggctcggcaagaactacaagaagtacatacaa
gcagagccaccaaccaacaagtccctgtccagcctggtggtgcagctgctccagtttcag
gaagaggtttttggcaaacatgtcagcaacgcgccacttactaaactgccgatcaaatgt
ttcctagatttcaaagcaggaggatccctgtgccatattctcgcagctgcctacaagttc
aagagtgaccagggatggcggcgttatgatttccagaatccgtcccgcatggaccgcaat
gtggaaatgttcatgaccattgagaagtccttggtacagaataattgcctgtctcgacct
aacattttcctgtgcccagaaattgagcccaaactgctagggaaattaaaagacattgtt
aagagacaccagggaaccatctctgaggataagagcaatgcctcccatgttgtgtgccct
gtcccagggaacctagaagaagaggaatgggtacggccagtcatgaagagggataaacaa
gttcttctacactggggctactatcctgacagctacgacacgtggatcccagcgagtgaa
atcgaagcatctgtagaggacgctcccactcctgagaaaccgaggaaggtccatgcaaag
tggatcctcgacactgacacgttcaacgagtggatgaatgaggaagactatgaagtcagt
gatgacaaaagtccagtctcccgaagaaagaagatctcagcgaagacgctgacggatgag
gtaaacagcccggattcagacagacgggacaagaaggggggaaactataagaagaggaag
cgctctccctctccttcgcccaccccagaggctaagaagaaaaatgctaagaaaggaccc
tcaacaccttataccaagtcaaagcgaggccacagagaagaggagcaagaagacctgaca
aaagacatggacgagccctctccagtcccaaatgtggaagaggtgacactccccaaaaca
gtcaacactaaaaaggactctgagtcagccccagtcaaaggcggcaccatgactgacctg
gatgaacaggacgatgaaagcatggagaccacgggcaaggacgaggatgagaacagcacg
ggcaacaaaggagagcaggctaagaacccagacctgcacgaggacaatgtgaccgagcag
acccaccacatcatcatccccagctacgccgcctggtttgactacaacagcgtccatgcc
attgaacggagggctcttcctgagttcttcaacggcaagaacaagtctaagactccagag
atctacctggcatatcggaacttcatgattgacacttaccgactgaatccccaggagtat
ctaacatccactgcctgtcggcggaacttggcgggtgatgtctgtgctatcatgagggtc
catgccttcctggaacagtggggtcttattaactaccaggtagatgctgagagccgacca
accccaatggggcctccacccacctctcacttccatgtcttggcggacacaccatcaggg
ctggtccctcttcagccaaagcccccacagggccgccaggttgatgctgacaccaaggct
gggcggaagggcaaagagctggatgacctggtgccagagacggctaagggcaagccagag
ctgcagaaccctgcttcccagcaaatgctgaacttccctgagaaaggcaaggagaaacca
gcagacatgcagaactttgggctgcgcacagacatgtacacaaagaagaacgtcccctcc
aagagcaaagctgcagcaagtgccactcgggaatggacggagcaggagacactgctgctc
ctggaggctctggaaatgtacaaggacgactggaacaaagtgtctgagcacgtgggaagc
cgcactcaggatgagtgcatcctgcattttcttcgccttcccatcgaagacccgtacctg
gaggactcagaggcttctctaggccctctggcctaccagcccatcccctttagtcagtca
ggcaaccctgttatgagcactgtcgccttcctggcctctgtcgtcgatccccgagttgcc
tctgctgctgcgaagtcagccctagaagagttctcaaaaatgaaggaagaggtacccaca
gctttggtggaagcccacgtgcgtaaggtggaagaagcagccaaagtcacaggcaaggct
gacccagcctttggtctggagagtagcggcatcgcagggactgcctctgatgagcctgag
cgcattgaggaaagcgggactgaggaggcacggccagagggccaggcagccgatgagaag
aaggagcctaaggaaccacgggaaggagggggcgctgtagaggaagaagcaaaggaggaa
ataagtgaggttcccaagaaagatgaagagaaagggaaagaaggtgacagcgagaaggag
tctgagaagagtgacggggacccgatagttgatcctgagaaagacaaggaaccaacagaa
gggcaggaggaagtgctaaaggaagtggcagagccagagggggagaggaagaccaaggtg
gagcgcgacattggtgaaggcaacctgtccacagctgctgctgcagccctggccgctgct
gcagtcaaagcgaagcacttggctgcagttgaggagaggaagatcaagtctttggtggct
ctgctggtagagacccaaatgaagaaactagagatcaaactccgacattttgaggagctg
gagacaataatggaccgggagcgagaggcgctggaataccagaggcagcagctcctggcc
gaccggcaagccttccacatggagcagctgaagtatgcagagatgagggcccggcagcag
cacttccagcagatgcaccagcagcagcagcagcagccaccaaccttgcccccaggctcc
cagcccatacctccgaccggggctgctggaccacctacagtccatggtctagctgtgcct
ccagccgctgtggcctctgcccctcctggcagtggggcccctcctggaagcttgggccct
tctgaacagattgggcaggcagggacaactgcagggccacagcagccaccacaagctgga
gcccctcagcctggggcagtcccaccaggggtacccccccctggaccccatggcccctca
ccgttccccaaccaaccaactcctccctcaatgatgccaggggcagtgccaggcagcggg
cacccaggcgtggcgggtaatgctcctttgggtttgccttttggcatgccgcctcctcct
gctgctccatccgtcatcccattcggtagtctagctgactccattagtattaaccttccc
cctcctcctaacctgcatgggcatcaccaccatctcccgtttgccccgggcactatcccc
ccacctaacctgcctgtgtccatggcgaaccctctacatcctaacctgccggcgaccacc
accatgccatcttccttgcctctcgggccggggctcggatccgccgcagcccagagccct
gccattgtggcagctgttcagggcaacctcctgcccagtgccagcccactgccagaccca
ggcaccccgctgcctccagaccccaccgctccgagcccaggcacagtcacccctgtgcca
cctccacagtga
DBGET
integrated database retrieval system
