Mus pahari (shrew mouse): 110327077
Help
Entry
110327077 CDS
T05929
Symbol
Utp20
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mpah03009
]
110327077 (Utp20)
Ribosome biogenesis [BR:
mpah03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
110327077 (Utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Motif
Other DBs
NCBI-GeneID:
110327077
NCBI-ProteinID:
XP_021061458
Ensembl:
MGP_PahariEiJ_G0031372
LinkDB
All DBs
Position
9:86048284..86128570
Genome browser
AA seq
2788 aa
AA seq
DB search
MKPKPLSHKTENTYRFLTFAERLGNVNIDIIHRIDRTASYDEDVETYFFEALLKWRELNL
TEHFGKFYKEVIDKCQSFNQLVYHQNEIVQSLKTHLQVRNSFAYQPLLDLVVQLARDLQT
DFYPHFEDFFLTITPILETQDTELLEWAFTSLSYLYKYLWRLMVKDMAKIYSLYSTLLAH
KKLHIRNFAAESFTFLMRKVSDKNALFNLMFLDLNEHPEKVEGVGQLLFEMCKGVRNMFH
SCTGQALKLLLQKLGPVTETETQLPWILVGETLKTMAKSTVVYIYKEHFGVFFDCLQESL
LELHNKVTEENCCENSEQMKRLLETYLIVVKHGSGSKITRPADICGVLSEALQTASLSTS
CRKTLLDVVSALLLAENVSLPETLIKETVEKVFESKFERRLVLDFSEVMFAMKQFEQLFL
PSFLLYIENCFLMDNSVVSDEALAILAKLILHKAPPPTAGSMAIEKYPLVFSQQTVGSYL
KQRKADSKRRKEQFPVLNHLLAIVQLPPNKDATSLSQSWAALVVLPHLRPLEKEKTISLV
SCFIESLFLAVNRGSFGKGHLFVLCQAVNTLLSLEESSELLHLVPVERVKHLVLTFPMEP
SVLLLADLYYQRLALCGCKGPLSEEALMELFPKLQANISTGVSKIRLLTIRILNHFDIRL
PVSMEDDGLSERQSAFAILRQAELVPATVSDYREKLLHLRKLRHDVVQGAVPQGQLQEVP
LRYLLGMLYVNFSALWDPVIELISSHAYGMENKQFWNVCYEHLEKAASHAEKELQKDVRD
EESTGDESWEQTQEGDVGDLYQQQLALKTDCRERLDHTNFRFLLWRALARFPERVEPRSR
ELTPLFLRFINNEYYPADLQVAPTQDLRRKGRGAVAEEAEEEPAAGEDEELEEEAVPTED
APQKKKTRRAAAKQLIAHLQVFSKFSNPRSLYLESKLYELYLQLLLHQDQAVQKITLDCI
MTYRHPHVLPYRENLQRLLDDRSFKEEIVHFNISEDNTVVKAAHRADLFPILMRILYGRM
KNKTGSKTQGKSASGTRMAIVLRFLAGTQPEEIQLFLDLLSEPVKHFKNGDCCSAVIRAV
EGLDVSKVLPVGRQHGVLNSLEVVLKNISHLISTYLPKILQILLCLTATVSRILDQREKI
QLRFINPLKNLRRLGIKMVTDIFLDWESYQFKAEEIDAVFHGTVWPQICRLGSESQYSPT
PLLKLISIWSRNARYFPLLAKQKPGHPEYDILTNVFAVLSAKNLSDATTSIIMDIVDDLL
NLPDFEPTETVPSLPVTGCVYAEVAENTEPVSVGGRLILPHVPAILQYLSKTTISAEKVK
KKKNRAQVSKELGILSKISKFMKDREQCSLLITLLLPFLLRGSVTQDTELDILVTVQNLL
QRCLNPAHFLGPLAKLFSVIKNKLSRQLLCTVFQSLSDFESGLKYITDIVKLNAFDKRHL
DDINFDVRFSAFQTITSNIKAMQTVDVDYLIAVMHNCFYNMEIGDMSLSDNASICLTSII
KRLAALNVTEKEYKEIIHRTLLEKLRKGLKSQIESVQHDYTLILSCLIQTFPNQLEFKDL
VQLTHYHDPEMDFFENMKHIQIHRRARALKKLAKQLLEGQVVLSSKSLQNYIMPYAMAPI
LDEKMLKHENITIAATEVIGAICRHLSWPAYVYYLKHFIHVLQSGQINQKLAVSLLVIVL
EAFHFDYKTLEEQMGNVKNEENTVEMAELLEPEAMEVEDMDESGKEQASERLSDSKEALG
APEAAAAEGTAAKEQECISRSVSFLPRSKEELERTIQTIQGAITGDILPRLHKCLASATK
REEEHKLVKSKVVNDEEVVRVPLAFAMVKLMRSLPREVMEANLPSILLKVCVLLKNRAQE
IRDIARSTLSKIIEDLGVHFLQYVLKELQTTLVRGYQVHVLTFTVYTLLQGLSSKLQVGD
LDPCLHIMTEIFNHELFGALAEEKEVKQILSKVMEARRSKSYDSYEILGKFVGKQQVTKL
ILPLKEILQNTTSLKLARKVHETLRRIIAGLIVNPDMTADALLLLSYGLVSENLPLLTEK
EKKPAAPVPDARLPPQSCLLLPTTPVRGGPKAAVNKKTNMHIFIESGLRLLHLSLKTSKI
KSSSEHVLEMLDPFVSVLINCLGAQDVKVITGALQCLIWVLRFPLPSIASKAEQLTKHLF
LLLKNYARVGAARGQNFHLVVNCFKCVTIVVKKVKSHQITEKQLQVLLAYAEEDIYDTSR
QATAFGLLKAILSRKLLVPEIDDIMRKVSKLAISAQNEPARVQCRQVFLKYILDYPLGEK
LRPNLEFMLAQLNYEHETGRESTLEMIAYLFETFPQGLLHEHCGMFFIPLCLMMVNDDSA
LCKRMASMAIKSLLSKVGCEKKDWLFDLVTSWFEAKKRLNRQLAALTCGLFVESEGVDFE
RRLGTLLPVIEKEIDPENFKDIIEETEEKAADRLLFGFLTLIRKLIKECNIIHFTKPSET
LSKIWSHVHSHLRHPHSWVWLTAAQIFGLLFASCQPEELVQKWEGKKTKRKTSDPIAVRF
LTSDLGQKMKSISLASCHQLHSKFLDESLGEQVVKNLLFIAKVLYLLELESGNKRGKVQD
SEEQDTLADALAREAAEEKAGAGGNLESDRAKKEEPSKPATLMWLIQKLSRMAKLEAAYS
PRNPLKRTCIFKFLGAVAVDLGVDRVKPYLPVIIAPLFRELNSTFSEQDPVLKNLSQEII
ELLRKLVGLESFSLAFASVQKQASEKRALRKKRKALEFVTNPDIAAKKKLKKHKNKSEAK
KRKIEFLRPGYKAKRQKSHSLRDLAMVE
NT seq
8367 nt
NT seq
+upstream
nt +downstream
nt
atgaagccaaagccactttcgcacaagaccgagaacacgtaccggtttcttacttttgcg
gagagactggggaatgtgaacattgatattattcaccgcatcgacagaactgcaagctat
gacgaggacgtcgagacttacttcttcgaggctctgctgaagtggagagagctgaacctt
acggagcattttgggaaattttacaaagaagtcattgacaaatgtcaatcttttaaccag
ttggtctatcatcaaaatgaaatcgtccagagcttgaagactcacctgcaagttaggaac
agttttgcctaccaacctcttttggatttagtagtacagttggcacgagatctgcagact
gatttctacccccactttgaagacttcttcctgacaatcacgcccatcctggagactcag
gacacagaactgttagaatgggctttcacctcgctctcgtatctttacaagtacctgtgg
agactgatggtgaaggacatggccaagatatacagcttgtatagcaccctcttggctcat
aaaaaactacatataagaaattttgcagccgaaagttttactttcttgatgagaaaggtc
tctgataaaaatgcacttttcaacttaatgtttcttgatcttaatgaacatccagagaaa
gtggaaggagttggacagctgctctttgaaatgtgcaagggagtcagaaatatgtttcac
tcctgcacgggccaggcactgaagctccttttgcaaaagctaggaccagtcactgaaaca
gaaactcaactaccgtggattttagttggggaaaccctaaaaaccatggccaaatccact
gtggtgtatatctataaggaacattttggtgtgttttttgactgtttgcaagagtcactc
ctggagctacacaacaaagttacagaagaaaactgttgtgaaaactctgaacagatgaag
cgcttgttagaaacatacctgatcgtcgtgaaacatggaagtgggtccaagataacaagg
cctgcggacatttgtggggtattgtctgaagcattacagacagccagtctctccacatct
tgccggaagactctcttggatgtagtttctgctttgctcctagctgagaatgtttccttg
ccagagaccctcatcaaagaaaccgtagaaaaagtattcgaaagcaaatttgagagacgt
ttggttttggatttttctgaagtcatgtttgctatgaagcagtttgaacagctgttcctg
ccgagctttctcttgtacattgagaattgcttcttgatggacaactctgtggtcagtgat
gaagcactggccattttagccaagctcattctgcacaaagctcctccccccactgctggt
tccatggccattgaaaaataccctctggttttctcacagcagacagtgggatcctactta
aagcagaggaaggctgactccaagagaagaaaggaacagttcccagtcttaaaccatctc
ttagccatagttcagttacccccaaataaagatgccacatccctttcacagtcctgggca
gcccttgtggtattacctcatcttagacctcttgagaaagagaagacgatatcgcttgtg
tcctgcttcatagagtcactcttcctggctgttaacagagggagctttgggaaaggacat
ttatttgttctttgtcaagctgtaaatactctactaagtttggaagagtcttctgaactt
cttcatctggtccctgtggaacgagtgaagcacttagtgttaacatttccaatggagcca
tctgtgttgctgttggccgatctctattatcagaggctggcattatgtggatgcaaaggg
ccactctctgaggaggctttaatggaattatttccaaagttacaagcaaacatctcaact
ggtgtctccaagattcgacttttgacaataaggatcctaaatcattttgacatccggctt
ccagtttcaatggaggatgatgggctctcggagcgacagtcagcctttgctatattacgc
caggctgaacttgtgccagcaactgtgagcgattacagagagaagcttctgcacttgaga
aagctgagacatgatgtggtgcagggtgcagtccctcagggacagctgcaggaggtgcca
ctccgttatctgttaggcatgctgtatgtcaacttcagtgccctctgggaccctgttatt
gagctcataagttctcatgcctatggaatggaaaacaagcaattctggaatgtctgctat
gagcatctagaaaaggcagcttcccatgccgagaaagaactgcaaaaggatgtgagagat
gaagagtccacaggagatgaaagttgggagcaaacccaggaaggagatgttggggatctt
taccagcagcagttagcattgaaaactgactgtcgggagcgactggaccataccaacttc
cgattcctgctttggcgagcattggccagattcccagagcgagtagagccacggtccagg
gaactcacccctcttttcctgagattcatcaacaatgagtattatccagcagatctgcaa
gttgctcctactcaggatctacgcagaaaaggccgaggagcagtggctgaggaagcggag
gaagaacctgctgctggagaggatgaggaactggaggaagaggccgtgcccacagaggat
gcgccccagaagaaaaagacaagaagggctgcagcaaagcagctaatagctcatttgcaa
gtcttctctaagttctcgaacccacgttccttatatctagaatccaaattgtacgagttg
tatcttcagttattgctacaccaagatcaagctgtgcaaaaaataaccttggactgcata
atgacgtatagacatcctcatgtcctcccttacagggaaaacttacaaaggctgctggac
gacaggagctttaaggaagagatcgtgcatttcaacatctcagaagataacacggtagtg
aaagcggcccaccgggcagacttgtttccgattctgatgagaattttgtatggacggatg
aagaataagacagggagtaaaacccagggcaaatctgcttcaggaacccgcatggcaatt
gttttacggttcctcgcggggacccaacctgaagagatccagttattcttagacctgctg
tctgaacctgtgaagcacttcaagaacggggactgctgttctgctgtcatccgggcagta
gagggtttggatgtgtcgaaagttcttcctgtggggcggcagcacggcgtcttgaacagc
ctggaggtcgtgttgaagaacatcagtcatctcatcagcacataccttcccaagatcctg
cagatcctactgtgtctgacagcaactgtctcccgcatcctcgaccagcgagagaagatt
cagttgagatttattaacccactgaaaaatttaagacgtttgggaatcaagatggtcacc
gatatctttttggattgggaatcctatcagttcaaagcagaagaaattgatgctgtgttt
catggtacagtttggccccagatctgcaggcttggatctgagagtcagtattcgcctact
cctctgttgaaactaattagcatctggagcagaaatgcaagatatttccctcttctggct
aaacagaaacctggacatccagaatatgatatcctgaccaatgtctttgcagttctctca
gcaaagaacctttcagatgccacaactagcattataatggatatagtcgatgatctcctc
aaccttccagatttcgagcccacagaaacagtgccaagcttgccagtaactggctgtgtg
tacgccgaagtagcagaaaacacagagcctgtgagtgtaggagggagactgattctgcca
catgtgcctgcaattcttcagtacctcagcaaaaccacgataagtgcagaaaaggtgaag
aagaagaagaacagggcacaagtcagtaaggagctcggcattctttccaagataagcaag
tttatgaaagacagagagcagtgttctctcctcattacactgctccttccgttcctcctc
cggggcagtgttactcaggatacagagcttgacatcctggtgacagtgcagaacttgtta
cagcgctgcctgaatcccgcacacttcctcggacctctcgccaaactcttttcagttatt
aagaacaagttgtcgagacagctgctctgtaccgttttccagagtctgtctgattttgaa
agtggactaaagtatattacagatattgtaaagcttaatgcctttgataaaagacatctc
gatgacatcaactttgacgttcggttctcagccttccagaccatcacctccaacataaag
gcgatgcagacggtggatgtggactacctcattgctgtgatgcacaactgtttctataat
atggagataggagacatgtctttaagtgacaatgccagcatatgcttgacaagtatcatc
aaaaggctagctgctctgaatgtcacagagaaagaatataaggagatcattcaccggaca
ctcctggagaaactgaggaaggggctgaagagccagatagagagtgttcaacatgactat
accctgatcctttcctgtttgattcaaacttttccaaatcaactggaatttaaggacttg
gtgcagctcactcattaccatgacccagaaatggatttctttgagaacatgaagcacatt
cagatccacaggcgagcaagagccctgaagaaactggctaagcagctcctggaaggccag
gttgtgctgtcttccaaatctcttcagaattacatcatgccttatgccatggctccaatt
cttgatgagaaaatgctcaagcatgaaaacataactattgcagctacagaggttattggc
gccatctgcagacacctgtcttggccagcatatgtctactacttgaaacatttcatccat
gtcttgcagtcaggccaaatcaaccagaaactggctgtcagcttgctggtaatcgtgttg
gaagcattccattttgactacaaaactcttgaagaacaaatgggaaatgttaagaatgaa
gaaaacacggttgagatggctgagttactagagccagaagccatggaagtggaggacatg
gatgagtcagggaaggaacaagcctctgagagattgtcagacagcaaggaggctctggga
gcccccgaggcagctgctgctgaggggacggcggctaaggagcaagagtgtatctccagg
tctgtctcttttcttcctcggagtaaggaggagctggaaagaacaattcaaaccatccag
ggagccataactggcgacatcctccccaggctgcataagtgcctcgcatctgcgaccaaa
agagaagaagagcacaaactggtcaagtcaaaggtcgtgaatgatgaggaagtggtccga
gttcccctggcttttgccatggttaagctgatgcggtcccttccacgggaagttatggag
gcaaatctgcccagtattttgctgaaagtgtgtgtcctcctcaagaacagagcacaggaa
atccgagacattgcacgcagcactctttccaaaataatcgaagatctgggtgtgcacttt
ctacagtacgtcctgaaagaattacagacaacccttgtccgtgggtatcaggtccacgtg
ctcactttcactgtttacacgttgctgcaaggcctctccagcaagctgcaagttggggat
ttagatccttgtcttcacataatgactgagatttttaaccatgaattatttggtgccctt
gctgaagaaaaggaagtaaagcagattctgtccaaagtcatggaggcgcgaaggagcaag
agttacgattcttatgaaatcttgggcaaatttgtgggaaagcagcaagttacgaaactt
attcttccattaaaagagatcctacaaaataccacaagtttaaaactggcccggaaagtt
cacgaaaccttacgccgaattatagcaggattaattgtgaatccagacatgacagcagat
gctcttctgctgctcagttacggtttggtcagtgaaaatctgccgctgctaacagaaaag
gaaaaaaaaccagcagcccctgtacctgatgctcgactgccaccccagagctgccttctg
cttcccacaactccagttcgaggtgggccaaaagcggccgtgaacaagaaaaccaacatg
catatatttattgagtctgggcttcggctgctgcacctgagtctaaagacgtccaagatc
aagtcttctagtgagcatgtgctggaaatgttggacccctttgtgtccgtcctcataaat
tgcctgggggcccaggatgtgaaggtgatcacgggtgctttgcagtgcctgatctgggtc
ttgcggttccctctgccttccatagcaagcaaagcagagcagctgacgaaacaccttttc
ctcttgctgaagaactatgcaagagtgggggctgcccggggccagaacttccacctggtc
gtgaattgtttcaagtgtgtgaccatcgttgtaaagaaagtcaagtctcaccagataact
gaaaaacaacttcaggttcttttggcttatgctgaggaagacatttatgatacttcaaga
caagccactgcgtttggtcttctcaaggctattttatcaagaaaattattggtcccagaa
attgatgatatcatgcggaaagtatccaagttggcaatttctgcacaaaatgaacctgcc
agggtccagtgcagacaggttttcctgaagtacattcttgactatcccctcggtgagaaa
ttgaggccgaacttggaattcatgctcgctcagctgaattatgaacatgagacgggaaga
gaatccactttggaaatgatcgcttatctgtttgagaccttccctcagggactcctccat
gagcactgcgggatgttcttcatccccctttgcctgatgatggtcaacgatgactctgcc
ctgtgcaagaggatggcatccatggccatcaagtccttactcagcaaggtgggctgtgag
aagaaagactggctcttcgacctagtcacctcctggttcgaagcaaaaaagcgattaaac
aggcagctagctgccctgacctgtggtttattcgtggaaagtgaaggagttgattttgag
agaaggcttggaactcttcttcctgtgattgaaaaggaaattgatcctgaaaattttaaa
gatatcatagaggagacagaagaaaaggctgcagatcgcctgctgttcggttttctcaca
ctgataaggaaactcatcaaggagtgtaacattattcactttaccaagccctctgagacg
ttgagtaaaatctggagtcatgtgcactctcacctcagacacccgcacagctgggtatgg
ctcacagcagcccagattttcggattgctctttgcctcttgccaaccagaggagctcgtt
caaaagtgggaaggcaaaaagaccaaaaggaagacctcagaccctatagcagtcaggttc
ctaacaagtgaccttggccagaagatgaaaagtatctctctggcttcatgccatcagctg
cattccaaattcttagatgagtctctaggagagcaggttgttaagaatttactgttcata
gcaaaagtcttatatttgctggaacttgagtctgggaacaagcgaggaaaggtacaagac
tcagaggaacaagacacgttagcggatgctctggccagagaggcagcagaagagaaggct
ggtgcaggtgggaatttggagtccgacagagcaaagaaggaagagcccagcaagccagca
acattgatgtggctgatccagaagctgtcccgaatggctaagctggaagcagcctattcg
cccagaaaccccttaaagagaacctgcatctttaagttccttggtgccgtagccgtggat
cttggagtagaccgggtaaagccctatctcccagtgatcatcgctcccctgtttcgagaa
ctcaacagcaccttttcagagcaagatcctgtgctgaagaatctatcccaggaaatcata
gaattactgcgaaagctggttggactggaaagcttctcactggcctttgcctctgtccag
aagcaggctagtgagaagagggctctccggaaaaagaggaaggccctggagtttgtaacc
aatcctgatattgctgccaagaagaagttgaagaaacataaaaataagagtgaagcaaag
aagaggaagatagagttcctgcgccccggctataaggccaagagacagaagtcccacagc
ctcagagacttagcaatggtggagtga
DBGET
integrated database retrieval system
