Mus pahari (shrew mouse): 110327344
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Entry
110327344 CDS
T05929
Symbol
Ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase DDX6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110327344 (Ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110327344 (Ddx6)
03036 Chromosome and associated proteins [BR:
mpah03036
]
110327344 (Ddx6)
Enzymes [BR:
mpah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110327344 (Ddx6)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110327344 (Ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
110327344 (Ddx6)
Chromosome and associated proteins [BR:
mpah03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110327344 (Ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Motif
Other DBs
NCBI-GeneID:
110327344
NCBI-ProteinID:
XP_021061908
Ensembl:
MGP_PahariEiJ_G0014991
LinkDB
All DBs
Position
10:39707202..39746231
Genome browser
AA seq
483 aa
AA seq
DB search
MSTARTENPVIMGLPSQNGQLRGPVKASAGPGGGGTQPQPHVNQLKNTSTINNGTPQQAQ
SMAATIKPGDDWKKTLKLPPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPS
PIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQV
SQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHV
QMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINL
MEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYS
CFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLH
RIGRSGRFGHLGLAINLITYDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPAED
EKP
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggctagaacagagaaccctgtaatcatgggcctgcccagtcagaacggccag
ctgaggggccccgtgaaggccagcgccggccctggaggagggggcacacagccacagcca
cacgtgaaccagctgaagaacaccagcacaatcaataatggcactccgcagcaagcccag
agcatggccgccactattaaacctggtgatgactggaaaaagactttaaaactccctcca
aaggatctaagaatcaaaacttcggatgtgacctccacaaaaggaaatgagtttgaagat
tactgtttgaaacgagagttgctaatgggaatttttgaaatgggctgggaaaaaccgtct
cctattcaggaggagagcattcccattgctttatctggtagggatatcttagctagagca
aaaaatggaacaggcaaaagcggtgcctacctcatccccttacttgaacggctggacctg
aagaaggacaatattcaagcaatggtgattgttcccactagagaacttgctctacaggtc
agtcagatttgcatccaggtcagcaaacacatgggaggggccaaagtgatggcaaccacc
ggaggaaccaatttacgggatgacataatgaggcttgatgatacagtgcatgtggtgatt
gctacccctggcagaatcctggatcttatcaagaaaggcgtagcaaaggttgatcatgtc
cagatgatagtattggatgaggcagataaattgttgtcacaggattttgtgcagataatg
gaggatattattctcacactacctaaaaataggcagattttactatattccgctactttc
cctcttagtgtacaaaagtttatgaattcccatctgcaaaaaccctacgagataaacctg
atggaggaactaaccctgaaaggagtgactcagtactacgcatatgtaacggagcgccaa
aaagtgcactgcctcaatacacttttctccaggcttcagataaaccagtccatcatcttc
tgcaactcttctcagagagtggaattactggccaagaagatttctcagctgggttactct
tgcttttatatccatgctaaaatgaggcaggaacatcgaaatcgtgtctttcatgatttc
cgaaatggcttatgccgcaatcttgtttgcactgatctgtttacccgaggtattgatata
caagctgtgaatgtggtaataaactttgacttcccaaagctggcagagacctatcttcat
cgtattggaagatcaggtcgctttggtcatcttggcttagccatcaacttgatcacatat
gatgatcgcttcaacctgaagagtattgaggaacagctggggacagagatcaaacccatc
ccaagcaacattgacaagagcctgtatgtggcagaataccacagtgagcctgcagaagac
gagaaaccataa
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