Mus pahari (shrew mouse): 110327497
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Entry
110327497 CDS
T05929
Symbol
Smarca4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03082
ATP-dependent chromatin remodeling
mpah04714
Thermogenesis
mpah05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110327497 (Smarca4)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110327497 (Smarca4)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110327497 (Smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mpah03021
]
110327497 (Smarca4)
03036 Chromosome and associated proteins [BR:
mpah03036
]
110327497 (Smarca4)
Transcription machinery [BR:
mpah03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110327497 (Smarca4)
Chromosome and associated proteins [BR:
mpah03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
110327497 (Smarca4)
Chromatin remodeling factors
BAF complex
110327497 (Smarca4)
PBAF complex
110327497 (Smarca4)
GBAF(ncBAF) complex
110327497 (Smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
Htt_C-HEAT
DUF2009
Motif
Other DBs
NCBI-GeneID:
110327497
NCBI-ProteinID:
XP_021062206
Ensembl:
MGP_PahariEiJ_G0014745
LinkDB
All DBs
Position
10:16966656..17057689
Genome browser
AA seq
1644 aa
AA seq
DB search
MSTPDPPLGGTPRPGPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPSAGHPMPTQG
PGGYPQDNMHQMHKPMESMHEKGMPDDPRYNQMKGMGMRSGAHTGMAPPPSPMDQHSQGY
PSPLGGSEHASSPVPASGPSSGPQMSSGPGGAPLDGSDPQALGQQNRGPTPFNQNQLHQL
RAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQQMPALPPPSVSAAGPGPGPGPGPAP
PNYSRPHGMGGPNMPPPGPSGVPPGMPGQPPGGPPKPWPEGPMANAAAPTSTPQKLIPPQ
PTGRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPLVPLHQKQSRITPIQKPRGLDPVEI
LQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQRQLRQEVVVCMRR
DTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDF
REYHRSVTGKLQKLTKAVATYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKK
DKRLAYLLQQTDEYVANLTELVRQHKAAQVAKEKKKKKKKKKAENAEGQTPAIGPDGEPL
DETSQMSDLPVKVIHVESGKILTGTDAPKAGQLEAWLEMNPGYEVAPRSDSEESGSEEEE
EEEEEEQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQDVDDEYGVSQALAR
GLQSYYAVAHAVTERVDKQSALMVNGVLKQYQIKGLEWLVSLYNNNLNGILADEMGLGKT
IQTIALITYLMEHKRINGPFLIIVPLSTLSNWAYEFDKWAPSVVKVSYKGSPAARRAFVP
QLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRR
LLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIR
RLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSEKDK
KGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLD
RILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPG
SEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCT
VNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEEQDESRHCSTGS
GSASFAHTAPPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRRE
EARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEK
QWLKTLKAIEEGTLEEIEEEVRQKKSSRKRKRDSEAGSSTPTTSTRSRDKDEESKKQKKR
GRPPAEKLSPNPPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKELPEYYELIRK
PVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQK
IEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGRKEKAQDRLKGGRRRPSRGSRAK
PVVSDDDSEEEQEEDRSGSGSEED
NT seq
4935 nt
NT seq
+upstream
nt +downstream
nt
atgtctactccagacccacccttgggtggaactcctcggcctggtccttccccgggccct
ggtccttcacctggtgcaatgctgggtcctagccctggtccttcaccaggttctgcccac
agcatgatggggccaagcccaggacctccttcagcaggacatcccatgcccacccagggg
cctggagggtacccccaggacaacatgcatcagatgcacaagcctatggagtccatgcac
gagaagggcatgcctgatgacccacgatacaaccagatgaaagggatgggcatgcggtca
ggggcccacacaggcatggcacctccacctagtcccatggaccagcattctcaaggttac
ccctcacccctgggcggctccgaacatgcctccagtcctgttccagccagtggcccatct
tcaggcccccagatgtcctctgggccaggaggggccccactagatggttctgacccccag
gccttggggcagcaaaacagaggcccaaccccatttaaccagaaccagctgcatcaactc
agagctcagataatggcctataagatgttggccaggggccagccgttgcccgaccacctg
cagatggccgtgcaaggcaagcggccgatgcctggaatgcaacagcagatgccagcacta
cctccaccctcagtgtccgccgcaggacccggccccggccccggaccaggaccagcccct
ccaaattacagtagaccccatggtatgggagggcctaacatgcctcccccaggaccctca
ggtgtgccccccgggatgcctggtcagccgcctggagggcctcccaagccatggcctgaa
ggacccatggccaatgctgctgcccccacaagtaccccacagaagctgattcccccgcaa
ccaacaggccgcccttcacctgcacctcctgctgtcccgcctgctgcctcacctgtaatg
ccaccacaaacacagtccccagggcagccagcccagcctgctccattggtgccactgcac
cagaagcagagccgaatcacccccatccagaagccccggggcctggaccctgtggagatc
ctacaggagcgggagtacagacttcaggctcgaattgcacacagaattcaggaacttgaa
aacctccctgggtccctggctggggaccttcgaaccaaagcaaccatcgaactcaaggcc
cttaggttgctgaacttccagaggcagctgcgccaggaggtggtggtgtgcatgcgaaga
gacacggccctagagacagcgctcaatgccaaggcctacaagcgcagcaaacgtcagtca
ctgcgggaggcccgcatcactgagaagctggagaagcagcagaagattgaacaggagcgc
aagcgccgccagaagcaccaggagtacctcaacagcattctgcagcatgccaaggacttc
agggagtatcacagatcagtcacaggcaaactccagaaactcaccaaggctgtggccacc
taccatgccaacactgagcgggagcagaagaaagaaaatgagcgcattgagaaagagcga
atgcggaggcttatggctgaagatgaggagggctaccgtaagctcattgaccagaagaag
gacaagcgcctggcctacctcctgcagcagacagatgagtatgtggccaacctcacagag
ctggtgcggcagcacaaagctgcccaggttgccaaggagaagaagaagaagaagaaaaag
aagaaggcagaaaatgctgaaggacagacacctgccattggaccagatggtgagcctctg
gatgagaccagccagatgagtgacctccctgtgaaggtgatccatgtggagagtggcaag
atcctcactggcacggatgccccaaaagccggacagctggaagcctggcttgagatgaac
ccagggtatgaagtagctcccaggtcagacagtgaagagagtggctctgaagaagaggag
gaggaggaggaagaggagcagcctcagcctgcacagccccccacactgcctgtggaagaa
aagaagaagattccagacccagacagcgatgatgtctctgaggtggacgcccgacacatt
attgagaacgccaagcaagacgtggacgatgagtacggtgtgtcccaggcccttgctcgt
ggcctgcagtcctactatgctgtggcccatgcagtcacagagagagtagataagcagtct
gccctcatggtcaacggtgtcctcaaacagtaccagatcaagggtttggagtggctggtg
tccctgtacaacaacaacctgaatggcatcctggctgatgagatggggctggggaagacc
atccagaccatcgcgctcatcacatacctcatggagcacaagcgcatcaacgggcccttc
ctcatcatcgtgcctctctcgacactgtcaaactgggcgtatgaatttgacaagtgggcc
ccctctgtggtgaaggtttcctacaagggctctccagcggcaaggcgagcttttgtcccg
cagcttcgcagtgggaagttcaatgtcttactgaccacctatgaatatatcatcaaagac
aaacatatcctggccaagatccgctggaagtacatgatcgtggatgaaggacatcgcatg
aaaaaccaccactgcaagttgacgcaggtccttaacacacactacgtggcccctcggcgc
ctgcttcttacaggcacaccgctgcagaacaagctgcctgagctctgggccctgcttaac
ttcctgctccccactatcttcaagagctgcagcaccttcgaacagtggttcaatgcaccc
tttgccatgactggagagaaggtggacctgaatgaggaggagactatcctcattattcgt
cgcctacacaaggttctgcggcccttcctgctgcggcggctcaagaaggaagttgaagcc
cagctccctgagaaggtagagtatgtcatcaaatgcgacatgtcagccctgcagcgtgtg
ctgtaccgtcacatgcaggccaaaggtgtgctgctgactgacggctccgagaaggacaag
aagggcaaaggtggcaccaagacactgatgaacactattatgcagctgcgcaagatctgc
aaccacccctacatgttccagcacatcgaggagtccttttctgagcacttggggttcacc
ggcggcatcgtgcaaggattggacctttaccgtgcctcagggaaatttgaacttcttgat
agaattttacccaaactccgtgcaacgaaccataaagtgctactcttctgccaaatgacc
tccctcatgaccatcatggaagactactttgcataccgtggcttcaaatacctcaggctt
gatggaactacaaaagcagaagaccggggcatgctgttgaaaacctttaatgaacctggc
tctgagtatttcattttcctgctcagtacccgtgctggggggctgggcctgaatctgcag
tcagctgacactgtgatcatctttgacagtgactggaatccccaccaggacctgcaagca
caggatcgagcccatcgtattgggcagcagaatgaggtgcgtgtgcttcgcttgtgcaca
gtcaacagtgtggaagagaagatactggctgctgccaaatacaaactcaatgtggatcag
aaggtgatccaggcaggcatgttcgaccagaagtcgtccagccatgagcggcgcgccttc
ctgcaggccatcctggagcatgaggagcaggacgagagcagacactgcagcacgggcagc
ggcagtgccagcttcgcccacactgcccctccgccagcgggcgtcaaccccgacttggag
gagccacctctaaaggaggaagatgaggtgcccgatgatgagaccgtcaaccagatgatt
gcccggcacgaagaagagtttgacctcttcatgcgcatggacttggaccgccggcgtgaa
gaagcccgcaaccccaagcggaagccacgcctgatggaagaggatgagctcccatcctgg
atcatcaaggatgatgcagaggtggagcggctgacatgtgaagaggaagaggagaagatg
ttcggccgtggttctcgccaccgcaaggaggtagactacagcgactcactgacagagaag
cagtggctcaagaccctgaaggctatcgaggagggcacgctggaggagatcgaagaggag
gtccggcagaagaaatcttcacgtaagcgtaagcgagatagcgaggccggctcctccacc
ccgaccaccagcacccgcagccgtgacaaagatgaggagagcaagaagcagaagaaacgt
gggcggccacctgcagagaagctgtccccaaacccacctaacctcaccaagaagatgaag
aagatcgtggatgctgtgatcaagtacaaagacagcagtagtggacgtcagctcagtgag
gtgttcatccagcttccctctcgcaaggaacttcctgagtactatgagctcatccgaaaa
cctgtggacttcaagaagatcaaggagcgcatccgaaaccacaagtaccgaagcctcaat
gacctagagaaggatgtgatgctgctgtgccagaacgctcagacgttcaacctcgagggt
tccctgatctatgaggactccatcgtactacagtctgtcttcaccagcgtacggcagaag
attgagaaggaggacgacagtgaaggcgaggaaagtgaagaggaagaggagggcgaggag
gaaggctccgagtctgagtcccgctctgtcaaggtgaagatcaagctgggccgcaaggag
aaggcccaggaccgactcaaggggggccgccggcggccaagccggggatcccgggccaag
ccagttgttagtgacgatgacagtgaggaggaacaggaggaggaccgctcaggaagtggc
agcgaggaagactga
DBGET
integrated database retrieval system
