Mus pahari (shrew mouse): 110327847
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Entry
110327847 CDS
T05929
Symbol
Trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
mpah
Mus pahari (shrew mouse)
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mpah03016
]
110327847 (Trub1)
Enzymes [BR:
mpah01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
110327847 (Trub1)
Transfer RNA biogenesis [BR:
mpah03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
110327847 (Trub1)
Prokaryotic type
110327847 (Trub1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
Motif
Other DBs
NCBI-GeneID:
110327847
NCBI-ProteinID:
XP_021062750
Ensembl:
MGP_PahariEiJ_G0014588
LinkDB
All DBs
Position
1:168530130..168569827
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AA seq
338 aa
AA seq
DB search
MAAAEAEVVSPLMVDTDPNTSGTAAASEAAAVAEAARTESQAQVSKAALAAKLMSLSGVF
AVHKPKGPTSAELLNRLKEKLLAEAGMPSPEWNKRQKQTLKVGHGGTLDSAAQGVLVVGI
GRGTKMLTSMLSGSKRYIAIGELGKATDTLDSTGKVTEEKPYDKITQEDIEGILQKFTGN
IMQVPPLYSALKKDGQRLSTLMKKGKVVEARPARPVTVHSISLLKFQPPFFTLDVECGGG
FYIRSLVSDIGKELSSCASVLELTRTKQGPFTLAQHALPEDRWTIDDIEQSLERCTSLLP
EELTFKKLKSDNSIDQVISCGYITLRETKREDDAVKTL
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgctgaggcagaggtggtttcacctctgatggtggatactgatccaaacact
tcaggaacagccgcggcctctgaagccgcagcggtagcggaagcagccaggactgaatcg
caagcccaggtctccaaggccgccctggctgctaagctcatgtcgctgagcggcgtgttc
gccgtgcacaagcccaaagggcccacttcagccgagctgctgaaccggctgaaggagaag
ctgctggcagaagctggaatgccttctccagaatggaacaagaggcaaaagcagacattg
aaagtcggacacggagggacgctggacagtgcggcgcaaggtgttctggtggttgggatt
ggaagaggaacaaaaatgctgaccagtatgttgtcagggtccaagaggtatattgccatc
ggagaactggggaaagctacggacaccctggattctactgggaaggtaacagaagagaag
ccatatgataaaataacacaagaagatatcgaaggcattctgcagaagtttactgggaat
ataatgcaagtaccccccctctattctgcgctgaagaaggatggacagagactctcaacg
ctaatgaagaaaggcaaggtggtggaggccagaccagcccggcccgtaactgtccacagt
atctctcttctgaagttccagcctccgttcttcacgctggatgttgaatgcggaggaggc
ttttacatccgaagcctggtcagtgacattggcaaagagctctcttcctgtgccagcgtg
ctggagctgacccgcaccaaacaggggcccttcacacttgcacagcacgccctccccgaa
gacaggtggaccatcgatgacatcgaacagtccctcgagcgctgcacgtctcttctgcca
gaggagctgacatttaaaaagctaaaatctgacaactccattgaccaggttataagctgt
ggatatataactctcagggagacaaagagagaagatgacgcagttaagacactttga
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