Mus pahari (shrew mouse): 110327930
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Entry
110327930 CDS
T05929
Symbol
Xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03008
Ribosome biogenesis in eukaryotes
mpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
110327930 (Xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
110327930 (Xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110327930 (Xrn1)
03009 Ribosome biogenesis [BR:
mpah03009
]
110327930 (Xrn1)
03016 Transfer RNA biogenesis [BR:
mpah03016
]
110327930 (Xrn1)
03036 Chromosome and associated proteins [BR:
mpah03036
]
110327930 (Xrn1)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
110327930 (Xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
110327930 (Xrn1)
Ribosome biogenesis [BR:
mpah03009
]
Eukaryotic type
Pre-60S particles
RNases
110327930 (Xrn1)
Transfer RNA biogenesis [BR:
mpah03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
110327930 (Xrn1)
Chromosome and associated proteins [BR:
mpah03036
]
Eukaryotic type
Gene silencing
piRNA pathway
110327930 (Xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Ppx_C
Motif
Other DBs
NCBI-GeneID:
110327930
NCBI-ProteinID:
XP_021062878
Ensembl:
MGP_PahariEiJ_G0015404
LinkDB
All DBs
Position
10:89408049..89510325
Genome browser
AA seq
1730 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDDDVHFRISDDKI
FTDIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKAIEKGE
TLPTEARFDSNCITPGTEFMARLHEHLKYFVNMKISTDKSWQGVTIYFSGHETPGEGEHK
IMEFIRSEKAKPDHDPNTRHCLYGLDADLIMLGLTSHEAHFSLLREEVRFGGKKTQRVCA
PEETTFHLLHLSLMREYIDYEFSALKEKITFKYDIEKIIDDWILMGFLVGNDFIPHLPHL
HINHDALPLLYGTYIAILPELGGYINESGHLNLPRFERYLVKLSDFDREHFSEVFVDLKW
FESKVGNKYLNEAAGVAAEEAKNCKERKPKGQENSLSWAALDKSESEGVASRDNFEDETE
DDDLFETEFRQYKRTYYMTKMGVDVVSDEFLANQAACYVQAIQWILHYYYHGVQSWSWYY
PYHYAPFLSDIRSISTLKIHFELGKPFKPFEQLLAVLPSASKNLLPTCYQHLMTSEDSPI
IEYYPPDFKTDLNGKQQEWEAVVLIPFIDETRLLEAMETCNHSLKKEERKRNQHSECLMC
WYDRDTEFTYPSPWPEKFPAIERCCTRYKMISLDAWRVDINKNKITRVDQKALYFCGFPT
LKHIKHKFFLKKSGVQVFQQSSRGENLMLEISVNVEPDELSVENIASSVLGKSVFVNWPH
LEEARVVAVSDGETKFFIEEPPGTQKVYLGKTAPPSKVIQLTDKEQSNWTKEIQGISEQY
LRRKGIIINETSAVVYAQLLTGRKYQINQNGEVRLEKQWSKQILPFVYQTVVKDIRAFDS
RFSSIRTLDDLFPPRSMVFMLGTPYYGCTGEVQDSGDVITEGRIRVVFSIPCEPNLDALI
QNQHKYSIKYNPGYVLAGRLGVSGYLVSRFTGSIFIGRGSRRNPHGDHKANVGLNLKFNK
KNEEVPGYTKKVGSEWMYSSAAEQLLAEYIERAPELFSYIAKNSQEDVFYEDDIWPGEKE
NGAEKVQEIITWLKGHPVSTLSRSSCDLHILDAAIVEKIEEEVEKCKQRKSNKKVRVTVK
PHLLYRPLEQQHGVIPDRDAEFRLFDRVVNVRESFSVPVGLRGTVIGIKGASREADVLFE
VLFDEEFPGGLTIRCSPGRGYRLPTSALVNLSHGSRCETGNQKLTAIVKPQPSVSHSSAA
PSGHLGGLNHSPQSLFLPTQVPTKGDDEFCSIWQSLQGAGKIQPLQPTVQEKGAVLPQEV
SQVTEPHKSGFNDHSIRHQQRKHDSHRKFKEEYKSPKAECQSQKLSNKQTSGGSARCNIK
LLKRNESPGTSEAQKAVTNYPNAVHKPPSGIENFLASLNISKESEAQLPHHGEPPDEADL
SPQSFAMKGTRMLKEILKIDSPDTTDSKNDMKKSDNEATISSRRDEHGMSSHPKPSKKLN
KLIPVTNTCHMNKPHGTNEFQNVASVDSVCWPGQMPPVSTPVTELSRICSLIGMPQPDFS
FLRTTQTMTVCQVKLSNGLLVHGPQCHSESEAKERAALFALQQLGSLGVSFPLPPPIFTN
YPPAVPPGAVPPVFTQPTANIMPSSSHLFGSVPWRPPVPVAGNAFHYPSYPGTMPLAGGM
PGGVHNQFIPLQVTKKRVANRKNFENKEAQSSQATPLQTNKPGSSDATKMTAQETPPASS
TSSQAAQPMSSHSETASQGHVGSQPRSAPSSSRRKSRKLAVNFNVSKPSE
NT seq
5193 nt
NT seq
+upstream
nt +downstream
nt
atgggagtccccaagttttaccgatggatctcggagcggtacccgtgcctcagcgaagtg
gtgaaggagcatcagattccagaatttgataacttgtacctggatatgaatgggattata
catcagtgttcccatcctaatgatgatgatgttcacttcagaatttcagatgacaaaatc
tttactgacatttttcactacttggaggtgttgtttcgaattattaaacctaggaaagtg
ttctttatggctgttgacggtgtggctcctcgagcaaaaatgaaccagcaacgtgggagg
cgttttaggtcagccaaggaggcagaagacaaaattaaaaaagcaatagaaaagggagaa
acacttcctacagaagccagattcgattctaactgtattacgccagggactgaattcatg
gccaggttgcatgaacatctgaagtattttgtaaatatgaaaatttccacagacaaatca
tggcaaggtgttaccatctacttctcaggccatgagactcctggagaaggagagcataaa
atcatggaatttatcagatctgagaaagcaaagccagatcatgatccaaacaccagacat
tgtctttatggcttagatgctgacttgatcatgcttggattaacaagtcacgaggcacat
ttttctctcttaagagaagaagttcggtttggtgggaaaaaaacacaaagggtatgtgca
ccagaagaaacgacatttcacctccttcacttgtctttaatgagagagtatattgattat
gaattttcagcattaaaagaaaagatcacatttaaatatgatattgaaaaaattatagat
gattggattttgatgggatttcttgttggcaatgattttatccctcatctacctcattta
catattaatcatgatgccctgcctcttctttatggaacatatattgctatcctgccagaa
cttggaggttatattaatgaaagtggacatctcaacttacctcgatttgagagatacctt
gtgaaactatcagattttgatcgagaacacttcagcgaagtttttgtggacctcaagtgg
tttgaaagcaaagttggtaacaagtatctcaatgaagcagcaggtgtggcagcagaagaa
gcaaagaactgcaaggagaggaaaccaaagggtcaggaaaattctttaagttgggctgca
ttagacaaaagtgaaagtgaaggagtggcttctagagataattttgaagatgagaccgaa
gatgatgatctgtttgaaactgaatttagacaatataaaagaacgtactacatgacgaag
atgggggtcgatgtagtatctgatgagtttctggctaatcaagctgcctgttatgttcag
gctattcagtggatcttacactattactatcatggagtccagtcctggagctggtactat
ccctatcattacgcacccttcctatctgatatccgcagtatcagtacactcaaaatccat
tttgaactagggaaaccattcaagccgttcgagcaactgcttgctgtacttccatcagct
agtaaaaatttgcttcctacatgctaccagcatttgatgaccagcgaagactcgccaatt
atagaatattatccacctgatttcaaaactgatctaaatgggaaacaacaggaatgggaa
gctgtggtattaataccctttattgatgagacgcgattattggaagccatggagacatgt
aaccactccctcaaaaaagaagagaggaaaagaaaccaacacagtgagtgcctgatgtgc
tggtatgacagagacacagagttcacctacccctctccatggccagaaaagttccctgcc
atagaacgatgttgtacaaggtataaaatgatatcattagatgcttggcgtgtagacata
aacaagaacaaaataaccagggttgaccagaaggcattatatttctgtggattccctact
ttgaaacacatcaaacataaattttttttgaagaaaagtggtgttcaagtattccagcag
agtagtcgtggtgaaaacttgatgttggaaatttcagtaaatgtagaaccagatgaactt
agtgtagagaacatagcttcgtcagtgctgggaaagtcagtcttcgttaactggcctcat
cttgaagaagctagagttgtggcagtatcagatggtgaaactaagtttttcatagaagaa
cctccaggaacacagaaggtttatttgggaaaaactgccccaccatctaaagtcatccaa
cttacagataaagaacaatcgaactggactaaagaaatacaaggaatttcagaacaatat
ctaagaagaaaaggaataataataaatgaaacatctgctgttgtgtatgctcagttgctc
acgggtcgtaaatatcaaatcaatcagaatggtgaagttcgtctagaaaaacagtggtca
aaacaaattcttccttttgtttatcaaactgttgttaaggacatccgagcttttgactcc
cgtttctccagtatcagaacgttggatgacttgtttcctcccagaagtatggtctttatg
cttggaactccttattatggctgcactggagaagttcaggattcaggagatgtgattaca
gaaggtagaattcgtgtggttttcagcattccatgtgaaccgaatcttgatgctttaata
cagaatcagcataaatactctataaagtacaacccaggatatgtgttggccggtcgcctt
ggagtgagtggataccttgtttcaaggtttacaggaagtatttttattggaagaggatct
aggagaaaccctcatggagaccataaagcaaatgtgggtttaaatctcaaattcaacaag
aaaaatgaggaagtccctggctatacaaagaaagtggggagcgagtggatgtactcgtcg
gcagcagagcagctcctcgcagagtacatagagagagcaccagaactgtttagttatata
gcaaaaaacagccaagaggacgtgttctatgaagatgacatctggcctggagaaaaggag
aacggggctgagaaagttcaagaaattattacttggctaaaaggacatcctgtcagtact
ctgtcccggtcttcttgtgatttacacattctggatgcagctattgttgaaaaaatcgag
gaagaagttgagaagtgcaagcaaagaaagagcaacaagaaagtccgagtgacagtgaag
ccccatttgctgtacagacctttagagcagcagcatggagtcattcctgatcgggatgcc
gagttccgtctctttgaccgtgttgtaaatgtgagagaaagcttctccgtgccagtcggc
cttcgcggcaccgtcattggcattaaaggggctagtagagaagctgatgtactatttgaa
gtattatttgatgaggaatttcctggaggcttaacaataaggtgctcacctggtagggga
taccgactgccaacaagtgccttggtgaatctttctcatgggagtcggtgtgaaactgga
aaccagaagttgacagccattgtgaaaccacagccgtctgtgagtcacagtagtgcagct
ccatctgggcacttgggaggcctcaaccactctcctcagtcgctttttcttcctactcag
gtacctacaaaaggtgatgatgaattttgcagcatttggcaatctctacagggagctgga
aaaattcaacccttgcagccgacagtacaagagaagggtgcagttctacctcaagaagta
agtcaagtaactgaacctcataaatctggctttaatgaccacagtatcagacatcagcaa
agaaaacatgactctcaccgaaaatttaaggaagaatataaaagtcctaaagctgagtgt
cagagtcaaaagttatccaataaacagacttctggagggtctgccagatgtaatattaaa
ctattgaagagaaatgaaagtccaggaacttcagaagcccagaaggctgtaactaattac
ccaaatgcagttcataagcctccctctggaattgagaactttttagcatctttgaatatc
tctaaggagagtgaagcacagttacctcatcatggagagcctccagatgaggcagatctg
tcaccgcagtcctttgctatgaaaggaacacggatgcttaaagaaattctgaaaattgat
agccctgacacaacagacagcaagaatgatatgaagaaatctgataatgaagccaccatt
tcttctagaagagatgagcatgggatgtcatcacatcctaagccaagtaagaagctgaat
aagttaattcctgttaccaatacatgccatatgaacaagcctcatgggactaacgagttc
caaaatgtggcatcggtggacagtgtgtgttggccgggccagatgcctcctgtgtccaca
ccagtaactgaactttctcgaatttgttcccttattggaatgccacaacctgatttctcc
tttctgcgaacaacacagacaatgacagtttgtcaggtaaaattgtctaatggcttactg
gtacatgggccacagtgccactctgaaagtgaagccaaggagagagctgctctttttgct
ttacagcaactgggctccttgggtgtgagttttcctttgcctccccccatatttacaaat
tatcctcctgcggtaccgcctggagccgtccctcctgtttttacccaacctactgctaat
ataatgccgtcatcatctcatctctttggctcagtgccatggagaccaccagtgccagtt
gctgggaatgccttccactatccttcatatcctggaaccatgcccttggctggaggaatg
ccaggcggagtgcacaatcagttcatacctctgcaggttacaaaaaaaagagttgcaaac
agaaagaattttgagaataaggaggcccagagttctcaggccacaccacttcagactaac
aagccagggtcttctgatgccaccaaaatgactgcacaagaaactccaccagcctcttcg
acatcctctcaggctgcccagcctatgtcttctcacagtgaaactgcctcccaaggccat
gttgggtcccaaccgaggtcagcaccaagctcctcaagaaggaaatcgagaaaactggct
gtcaactttaacgtttctaaaccttctgaataa
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integrated database retrieval system
