Mus pahari (shrew mouse): 110328503
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Entry
110328503 CDS
T05929
Symbol
Trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
110328503 (Trim71)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110328503 (Trim71)
04121 Ubiquitin system [BR:
mpah04121
]
110328503 (Trim71)
Enzymes [BR:
mpah01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
110328503 (Trim71)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
110328503 (Trim71)
Ubiquitin system [BR:
mpah04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
110328503 (Trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-C3HC4
zf-RING_5
zf-RING_UBOX
COG5_N
SidF
Motif
Other DBs
NCBI-GeneID:
110328503
NCBI-ProteinID:
XP_021063566
Ensembl:
MGP_PahariEiJ_G0015638
LinkDB
All DBs
Position
10:complement(107506253..107561710)
Genome browser
AA seq
855 aa
AA seq
DB search
MASFPETDFQICLLCKEMCGSPAPLSSSSSASSSSSQTSTSSAGGGGPGAAARRLHVLPC
LHAFCRPCLEAHRLPAPGGAGPAEALKLRCPVCDQKVVLAEAAGMDALPSSAFLLSNLLD
AVVATADEPPPKNGRAGGGPGGAGGHSNHRHHAHHPAQRAAAPAPQPPPGPAASPGSLLL
RRPHGCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPAAASAAQQ
LGLGPPFAGAPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTLGRHGGHSFAY
LQDALQDSRALTIQLLADAQQGRQALQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARYKK
ALEDRECELLWKVEKIRQVKAKSLFLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLA
RDRMLAQVQELKTIRGLLQPQEDDRIMFTPPDQALYLALKSIGFVSSGAFAPLTKATGDG
IKRALQGKVASFTVMGYDHDGEPRHSGGDMMSVVVLGPDGNLFGAEVSDQQNGTYVVSYR
PQLEGEHLVSVTLYNQHIENSPFKVVVKSGRSYVGIGLPGLSFGSEGDGEGKLCRPWGVS
VDKEGYIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQFDRPAGVACDASRRIIVADKD
NHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVF
LNKYGFEGSLWKHFDSPRGVAFNNEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGSGNGQ
FLRPQGVAVDQEGRIIVADSRNHRVQMFEANGSFLCKFGAQGSGFGQMDRPSGIAVTPDG
LIVVVDFGNNRILIF
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgttccccgagaccgacttccagatctgcctgctgtgcaaggagatgtgcggc
tcgcccgcgccgctctcctccagctcgtccgcctcgtcgtcgtcctcgcagacgtccacg
tcgtcggcgggcggcggcggccccggggcggcggcgcggcgtcttcacgtcctgccctgc
ctgcacgccttctgccggccgtgcctcgaggcgcaccggctgcccgctccgggaggcgcg
ggccccgccgaggcgctgaaactgcgctgccccgtgtgtgaccagaaggtggtcctggcc
gaggcggcgggcatggacgcgctgccgtcgtccgcctttctgctcagcaacctgctggac
gccgtggtggccaccgccgacgagccgccgcccaagaacgggcgcgcgggcggcggcccc
gggggcgcgggcggccacagcaaccaccggcaccacgcgcaccacccggcccagcgcgcc
gccgctccagcgccgcagccgccgcccggcccggccgcctcccccgggtcgctgctgctg
cgccggccgcacggctgcagctcctgcgacgagggcaacgccgcctcgtcgcgctgcctc
gactgccaggaacacctgtgcgacaactgtgtccgcgcgcaccagcgcgtccgcctcacc
aaggaccattacatcgagcgcggcccgccggggcctgcggccgcctccgcggcgcagcag
ctgggactcgggccgcccttcgcaggcgcgcccttctccatcctctcggtgtttccggag
cgcctcggcttctgccagcaccacgacgacgaggtcctgcatctatactgtgacacctgc
tctgtccccatctgcagagagtgcacgctgggccgccacggtggccacagcttcgcctac
ctccaggatgccctgcaggactctcgggcactcaccatccagctgctggctgacgcccag
cagggccgccaggctctccagctgagcatcgagcaggcccagactgtggcagaacaggtg
gagatgaaggcgaaggtggtccagtcggaggtcaaggccgtcacagctcgctacaagaag
gctctggaggatcgtgagtgtgagctgctatggaaggtggagaagatccggcaggtgaag
gcgaagtctctgttcctgcaggtggagaagctgcggcagaacctcaacaagctagagagc
accatcagtgccgtgcaacaggtcctggaagagggccgagccctggacatcctgctggcc
cgcgaccggatgctggctcaggtgcaggagctcaagaccatccggggcctcctgcagccc
caagaagatgaccgcattatgttcacaccccctgaccaggccctgtacctcgccctcaag
tctattggctttgtcagcagcggggccttcgccccactcacaaaggctacaggggacggc
atcaagcgtgcccttcaggggaaggtggcctctttcactgtcatgggctacgaccacgat
ggtgagccccgccactcgggaggtgacatgatgtcagttgtggtccttggccccgatggg
aacctgtttggtgcagaagtgagcgaccagcagaatggtacttatgtagtgagctatagg
ccccagcttgaaggtgagcacttggtgtcggtgacactgtacaaccagcatatagagaac
agccccttcaaggtcgtggtcaagtcgggccgcagctacgtgggcatcgggcttcccggg
ctgagctttggcagtgaaggtgacggtgagggcaagctctgcaggccctggggcgtgagt
gttgacaaggaggggtacatcatcgtggctgaccgaagcaataacagaatccaggtgttt
aagccctgtggctccttccaccacaagtttgggaccctagggtctcgtcctgggcagttt
gaccgaccagctggggtggcttgtgatgcctcccgtaggatcatagtggccgacaaggac
aatcatcgcattcagatcttcacctttgagggccagttccttcttaagtttggcgagaaa
ggcaccaagaatgggcagtttaactacccgtgggatgtagcagtgaattctgagggcaag
atcctggtttcggacacccggaatcatcgcatccagctgtttggacctgacggggtcttc
ctgaacaaatacggcttcgagggatctctctggaagcacttcgactctccacggggcgtg
gctttcaacaatgaaggtcacctggtagtcaccgacttcaacaaccaccggcttctggtt
attcaccctgattgccaatctgcccgcttcttgggctcggagggctcgggcaatgggcag
ttcctgcgaccacagggtgtggctgtggaccaggaagggagaatcatcgtagccgattcc
agaaatcaccgcgtgcagatgtttgaggccaacggcagcttcctgtgcaagtttggtgct
caaggcagtggcttcgggcagatggaccgcccctcaggtatcgcggtcaccccggatgga
ttgatcgtcgtggtggactttggcaacaatcgaatcctcatcttctaa
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