Mus pahari (shrew mouse): 110328776
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Entry
110328776 CDS
T05929
Symbol
Skiv2l2
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
mpah
Mus pahari (shrew mouse)
Pathway
mpah03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mpah00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110328776 (Skiv2l2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mpah03019
]
110328776 (Skiv2l2)
03041 Spliceosome [BR:
mpah03041
]
110328776 (Skiv2l2)
03009 Ribosome biogenesis [BR:
mpah03009
]
110328776 (Skiv2l2)
03016 Transfer RNA biogenesis [BR:
mpah03016
]
110328776 (Skiv2l2)
Enzymes [BR:
mpah01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110328776 (Skiv2l2)
Messenger RNA biogenesis [BR:
mpah03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
110328776 (Skiv2l2)
Spliceosome [BR:
mpah03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
110328776 (Skiv2l2)
Complex C
U4/U6.U5 tri-SnRNP related factors
110328776 (Skiv2l2)
Ribosome biogenesis [BR:
mpah03009
]
Eukaryotic type
Pre-60S particles
Helicases
110328776 (Skiv2l2)
Transfer RNA biogenesis [BR:
mpah03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
110328776 (Skiv2l2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
110328776
NCBI-ProteinID:
XP_021063877
Ensembl:
MGP_PahariEiJ_G0015967
LinkDB
All DBs
Position
11:complement(43118732..43177853)
Genome browser
AA seq
1040 aa
AA seq
DB search
MADAFGDELFSVFEDDSTTAAGAKKDKEKEKWKGPPGSADKAGKRLDTKLQSESASGGKN
KRDLDYEGTDEPIFGKRPRIEDSINEDLSLADLMPRVKVQSVETVEGCTHEVALPADEDY
IPLKPRVGKAAKEYPFILDAFQREAIQCVDNNQSVLVSAHTSAGKTVCAEYAIALALREK
QRVIFTSPIKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEV
MREVAWVIFDEIHYMRDSERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQ
PCHVIYTDYRPTPLQHYIFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQK
GRKGGTKGPSNVFKIVKMIMERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEE
VFNNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFAT
ETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEK
MSPTVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVV
EKVKNSEEQYNKIVIPNEENVVIYYKIRQQLVKLGKEIEEYIHKPKYCLPFLQPGRLVKV
KNEGDDFGWGVVVNFSKKSNVKPSSGELDPLYVVEVLLRCSKESLKNSATEAAKPAKPDE
KGEMQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVFKSIQEVQKRFPDGVPLLDPIDD
MGIQDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCEKKAQIAIDIKSAKRELKKA
RTVLQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSS
EQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYLSSF
KPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENK
FAEGITKIKRDIVFAASLYL
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgctttcggggatgagcttttcagcgttttcgaggatgattcgaccactgca
gcaggagccaagaaagacaaagagaaagagaaatggaaggggccaccagggtctgcagac
aaagccgggaaacgactggataccaaattacaatcagaatcagccagtggtgggaaaaac
aagagagatctagattatgaaggcactgatgagcctatttttggcaagaggcccagaata
gaagactcaattaatgaagatttaagcttggcggacctgatgcccagagtcaaggtgcag
tcagttgaaactgttgaaggctgcacacatgaggttgctcttcctgcagatgaggattat
ataccacttaagcctcgcgttgggaaggcagcaaaggaatacccattcattcttgatgct
ttccaaagagaagccattcagtgtgttgataataaccagtctgtgctagtatctgctcat
acatcagcaggaaagaccgtgtgtgccgagtatgctattgcattggctttaagagaaaaa
cagcgtgtaatatttaccagcccaattaaggctctaagtaatcagaaataccgtgaaatg
tatgaagaatttcaagatgtgggactgatgactggagatgttactattaatcccacagca
tcttgtctggttatgactacagagattttgagaagtatgctatatagaggctctgaagtt
atgcgagaagttgcttgggttatatttgatgaaattcattacatgagagattcagagcgt
ggtgtagtatgggaagaaactattattctgcttccagataatgttcactatgtctttctt
tcggctactattccaaatgctcgacagtttgctgaatggatttgtcacctacataaacag
ccctgtcatgttatatacactgattatcgacccactccactgcaacactacatatttcca
gcaggaggagatggccttcacctggtggttgatgaaaatggtgacttcagagaagataat
tttaacactgcaatgcaagtacttcgggatgcaggtgatttggccaaaggagaccagaag
ggacggaaaggaggaacaaaaggtccatcaaatgtgttcaagattgtgaagatgattatg
gaaagaaattttcagcctgtgattatcttcagtttcagtaagaaggactgtgaagcgtac
gctcttcagatgactaagttagacttcaacacagatgaagaaaagaagatggttgaagaa
gttttcaataatgcaattgactgcttgtctgatgaagataaaaagctccctcaggttgag
cacgttcttccacttctgaagcgtgggattggtattcaccatggtggtttacttcctatt
ttgaaagaaactatagaaattctcttttctgaaggattgataaaggccttatttgccaca
gagacttttgctatgggaattaacatgccagctagaactgttttatttacaaatgcccgt
aaatatgatgggaaggattttagatggatttcctctggtgagtacatccagatgtctggt
cgtgcaggaaggagaggcatggacgacagagggattgtgattcttatggtagatgagaag
atgagcccaactgttggaaaacagctgcttaaggggtcagctgatcctctgaatagtgct
ttccatctgacctataacatggttttgaacttactaagagtagaagaaattaaccccgag
tacatgcttgaaaaatccttctaccagtttcagcattatagagcaattccaggggtcgta
gaaaaggtaaagaactcagaagagcagtataataaaatagtaattcccaatgaagaaaat
gtggtcatctattacaagattagacagcaacttgtcaagctgggaaaagagattgaagaa
tatattcataaaccaaaatactgcttaccctttcttcaaccaggtcgtttggtaaaggtg
aaaaatgaaggcgatgatttcggctggggagtagtagtgaacttctcaaaaaagtcaaat
gtcaagcccagttctggcgaactagatcccttgtacgtggtggaagtcctcctgcgctgt
agcaaggaaagcctgaagaactcagccaccgaggcggcaaagccagcgaagccagacgag
aaaggagaaatgcaggttgttccagttttggtgcatctcctgtctgctatcagcactgtt
aggctctacattccaaaagacctccgccctgtggacaacagacagagtgtcttcaaatcc
atacaggaagttcaaaagcgttttccggacggcgttcctctgttagatcctatcgatgat
atgggcattcaagatcaaggactgaaaaaagtcattcagaaagtagaggcttttgagcat
cgaatgtactcacacccacttcacaatgatcctaatttggaaactgtttatacactttgt
gaaaaaaaggcacagattgcaatcgatatcaaatctgcaaagagagaactgaagaaggca
agaactgttctgcaaatggatgagctaaaatgccgcaagcgtgttctaagacggctgggc
tttgctacatcttcggatgtcatagagatgaaaggacgggtggcttgtgaaataagcagt
gcagatgagctccttctaacggagatgatgtttaatgggcttttcaatgacctttcttca
gagcaagcaaccgcactattaagctgttttgtgtttcaggagaattctagtgagatgccc
aaattaacagagcagttagctggaccactccggcaaatgcaggaatgtgctaaaaggatt
gcaaaggtttcagcagaggcaaagctggagattgacgaagaaacttacctaagctcattc
aagcctcacctgatggatgtggtgtatacctgggcaactggggccacatttgcccacatc
tgcaaaatgacagatgtttttgaaggcagtataattcgttgtatgaggcgtctggaagaa
ctgctacgacagatgtgtcaagcagcaaaagccattggaaacacagagctggagaacaaa
tttgctgaaggaattaccaaaatcaagagggatattgtatttgctgccagcctctactta
tag
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integrated database retrieval system
